Research Profile

Ivaylo Ivanov

Biography

Publications

Book Chapters

 YearPublication
(2011)'LYMPHOTOXIN-beta RECEPTOR SIGNALING SUPPORTS A UNIQUE STROMAL CELL NICHE THAT SUPPORTS IGA CLASS SWITCH RECOMBINATION IN THE INTESTINAL LAMINA PROPRIA. Advances in Tnf Family Research'
McCarthy, Douglas D.,Ivanov, Ivaylo I.,Tumanov, Alexei V.,Shi, Hang,Koroleva, Ekaterina P.,Summers-deLuca, Leslie,Ward, Lesley A.,Casellas, Rafael,Nedospovav, Sergei A.,Fu, Yang-Xin,Littman, Dan R.,Gommerman, Jennifer L.,Wallach, D.,Kovalenko, A.,Feldman, M. (2011) 'LYMPHOTOXIN-beta RECEPTOR SIGNALING SUPPORTS A UNIQUE STROMAL CELL NICHE THAT SUPPORTS IGA CLASS SWITCH RECOMBINATION IN THE INTESTINAL LAMINA PROPRIA. Advances in Tnf Family Research' In: Advances in Tnf Family ResearchAdvances in Tnf Family Research.   [Details]
(2010)'INDEX OF COMPETITIVENESS OF THE REGIONS IN BULGARIA. 6th International Scientific Conference Business and Management 2010, Vols I and Ii'
Ivanov, Ivaylo,Ginevicius, R.,Rutkauskas, A. V.,Pocs, R.,Stankeviciene, J. (2010) 'INDEX OF COMPETITIVENESS OF THE REGIONS IN BULGARIA. 6th International Scientific Conference Business and Management 2010, Vols I and Ii' In: 6th International Scientific Conference Business and Management 2010, Vols I and Ii6th International Scientific Conference Business and Management 2010, Vols I and Ii.   [Details]

Peer Reviewed Journals

 YearPublication
(2014)'Diamidine Compounds for Selective Inhibition of Protein Arginine Methyltransferase 1'
Yan, Leilei,Yan, Chunli,Qian, Kun,Su, Hairui,Kofsky-Wofford, Stephanie A.,Lee, Wei-Chao,Zhao, Xinyang,Ho, Meng-Chiao,Ivanov, Ivaylo,Zheng, Yujun George (2014) 'Diamidine Compounds for Selective Inhibition of Protein Arginine Methyltransferase 1'. Journal of Medicinal Chemistry, 57 (66):2611-2622   [Details]
(2014)'Segmented Filamentous Bacteria Antigens Presented by Intestinal Dendritic Cells Drive Mucosal Th17 Cell Differentiation'
Goto, Yoshiyuki,Panea, Casandra,Nakato, Gaku,Cebula, Anna,Lee, Carolyn,Diez, Marta Galan,Laufer, Terri M.,Ignatowicz, Leszek,Ivanov, Ivaylo I. (2014) 'Segmented Filamentous Bacteria Antigens Presented by Intestinal Dendritic Cells Drive Mucosal Th17 Cell Differentiation'. Immunity, 40 (44):594-607   [Details]
(2014)'Bifunctionalized Allenes. Part XIII. A Convenient and Efficient Method for Regioselective Synthesis of Phosphorylated alpha-Hydroxyallenes with Protected and Unprotected Hydroxy Group'
Ismailov, Ismail E.,Ivanov, Ivaylo K.,Christov, Valerij Ch (2014) 'Bifunctionalized Allenes. Part XIII. A Convenient and Efficient Method for Regioselective Synthesis of Phosphorylated alpha-Hydroxyallenes with Protected and Unprotected Hydroxy Group'. Molecules, 19 (55):6309-6329   [Details]
(2014)'Bifunctionalized Allenes. Part XV. Synthesis of 2,5-dihydro-1,2-oxaphospholes by Electrophilic Cyclization Reaction of Phosphorylated alpha-Hydroxyallenes'
Ismailov, Ismail E.,Ivanov, Ivaylo K.,Christov, Valerij Ch (2014) 'Bifunctionalized Allenes. Part XV. Synthesis of 2,5-dihydro-1,2-oxaphospholes by Electrophilic Cyclization Reaction of Phosphorylated alpha-Hydroxyallenes'. Molecules (Basel, Switzerland), 19 (88):11056-76   [Details]
(2014)'Structurally Distinct Complexes of Ubiquitin and Sumo-Modified PCNA Lead to Distinct DNA Damage Response Pathways'
Tsutakawa, Susan,Yan, Chunli,Xu, Xiaojun,Freudenthal, Bret,Weinacht, Christopher,Zhuang, Zhihao,Washington, Todd,Ivanov, Ivaylo (2014) 'Structurally Distinct Complexes of Ubiquitin and Sumo-Modified PCNA Lead to Distinct DNA Damage Response Pathways'. Biophysical Journal, 106 (22)   [Details]
(2014)'Alkylpurine Glycosylase D Employs DNA Sculpting as a Strategy to Extrude and Excise Damaged Bases'
Kossmann, Bradley,Ivanov, Ivaylo (2014) 'Alkylpurine Glycosylase D Employs DNA Sculpting as a Strategy to Extrude and Excise Damaged Bases'. PLoS computational biology, 10 (77)   [Details]
(2014)'Alkylpurine glycosylase D employs DNA sculpting as a strategy to extrude and excise damaged bases'
Kossmann, Bradley,Ivanov, Ivaylo (2014) 'Alkylpurine glycosylase D employs DNA sculpting as a strategy to extrude and excise damaged bases'. PLoS computational biology, 10 (77)   [Details]
(2014)'Evidence of efficient stop codon readthrough in four mammalian genes'
Loughran, Gary,Chou, Ming-Yuan,Ivanov, Ivaylo P.,Jungreis, Irwin,Kellis, Manolis,Kiran, Anmol M.,Baranov, Pavel V.,Atkins, John F. (2014) 'Evidence of efficient stop codon readthrough in four mammalian genes'. Nucleic Acids Research, 42 (1414):8928-38   [Details]
(2014)'Defining the Superfamily Conserved Mechanism for Flap Endonucleases FEN1 and XPG Specificity for 5' Flap DNA and DNA Bubbles, Respectively, by Hybrids Methods of Crystallography, SAXS, EM, and Computation'
Tsutakawa, Susan,Arvai, Andrew,Sarker, Altaf,Querol-Audi, Jordi,Finger, David,Nogales, Eva,Ivanov, Ivaylo,Cooper, Priscilla,Grasby, Jane,Tainer, John (2014) 'Defining the Superfamily Conserved Mechanism for Flap Endonucleases FEN1 and XPG Specificity for 5' Flap DNA and DNA Bubbles, Respectively, by Hybrids Methods of Crystallography, SAXS, EM, and Computation'. Biophysical Journal, 106 (22)   [Details]
(2014)'Bifunctionalized Allenes, Part XI: Competitive Electrophilic Cyclization and Addition Reactions of 4-Phosphorylated Allenecarboxylates'
Ivanov, Ivaylo K.,Parushev, Ivaylo D.,Christov, Valerij Ch (2014) 'Bifunctionalized Allenes, Part XI: Competitive Electrophilic Cyclization and Addition Reactions of 4-Phosphorylated Allenecarboxylates'. Heteroatom Chemistry, 25 (11):60-71   [Details]
(2013)'Opening of the sliding clamps PCNA and Rad9-Hus1-Rad1 occurs through multiple pathways'
Xu, Xiaojun,Guardiani, Carlo,Yan, Chunli,Ivanov, Ivaylo (2013) 'Opening of the sliding clamps PCNA and Rad9-Hus1-Rad1 occurs through multiple pathways'. Abstracts of Papers of the American Chemical Society, 246   [Details]
(2013)'Opening pathways of the DNA clamps proliferating cell nuclear antigen and Rad9-Rad1-Hus1'
Xu, Xiaojun,Guardiani, Carlo,Yan, Chunli,Ivanov, Ivaylo (2013) 'Opening pathways of the DNA clamps proliferating cell nuclear antigen and Rad9-Rad1-Hus1'. Nucleic Acids Research, 41 (2222):10020-10031   [Details]
(2013)'New structural framework for integrating replication protein A into DNA processing machinery'
Yan, Chunli,Brosey, Chris A.,Tsutakawa, Susan E.,Heller, William T.,Rambo, Robert P.,Tainer, John A.,Chazin, Walter J.,Ivanov, Ivaylo (2013) 'New structural framework for integrating replication protein A into DNA processing machinery'. Abstracts of Papers of the American Chemical Society, 246   [Details]
(2013)'A new structural framework for integrating replication protein A into DNA processing machinery'
Brosey, Chris A.,Yan, Chunli,Tsutakawa, Susan E.,Heller, William T.,Rambo, Robert P.,Tainer, John A.,Ivanov, Ivaylo,Chazin, Walter J. (2013) 'A new structural framework for integrating replication protein A into DNA processing machinery'. Nucleic Acids Research, 41 (44):2313-2327   [Details]
(2013)'BIFUNCTIONALIZED ALLENES. PART. X. AN ELECTROPHILIC CYCLIZATION PROTOCOL FOR CONVENIENT HIGHLY REGIOSELECTIVE SYNTHESIS OF 3-SULFONYLFURAN-2(5H)-ONES FROM 2-SULFONYLALLENOATES'
Christov, Valerij Ch,Ivanov, Ivaylo K.,Ismailov, Ismail E. (2013) 'BIFUNCTIONALIZED ALLENES. PART. X. AN ELECTROPHILIC CYCLIZATION PROTOCOL FOR CONVENIENT HIGHLY REGIOSELECTIVE SYNTHESIS OF 3-SULFONYLFURAN-2(5H)-ONES FROM 2-SULFONYLALLENOATES'. Heterocycles, 87 (99):1903-1916   [Details]
(2013)'REGULATORY ANALYSIS OF THE VARIATION PROCEDURES OF MEDICINAL PRODUCTS AFTER THE EU ACCESSION OF BULGARIA FOR THE PERIOD 2007-2010'
Dimitrova, Tatyana Benisheva,Ivanov, Ivaylo (2013) 'REGULATORY ANALYSIS OF THE VARIATION PROCEDURES OF MEDICINAL PRODUCTS AFTER THE EU ACCESSION OF BULGARIA FOR THE PERIOD 2007-2010'. Biotechnology & Biotechnological Equipment, 27 (33):3852-3856   [Details]
(2013)'Intestinal epithelial cells as mediators of the commensal-host immune crosstalk'
Goto, Yoshiyuki,Ivanov, Ivaylo I. (2013) 'Intestinal epithelial cells as mediators of the commensal-host immune crosstalk'. Immunology and Cell Biology, 91 (33):204-214   [Details]
(2013)'Architecture, dynamics, and interactions of human transcription elongation complex'
Ivanov, Ivaylo (2013) 'Architecture, dynamics, and interactions of human transcription elongation complex'. Abstracts of Papers of the American Chemical Society, 246   [Details]
(2013)'ENZYME COFACTORS Double-edged sword for catalysis'
Ivanov, Ivaylo (2013) 'ENZYME COFACTORS Double-edged sword for catalysis'. Nature Chemistry, 5 (11):6-7   [Details]
(2013)'Chip-Based Nanostructured Sensors Enable Accurate Identification and Classification of Circulating Tumor Cells in Prostate Cancer Patient Blood Samples'
Ivanov, Ivaylo,Stojcic, Jessica,Stanimirovic, Aleksandra,Sargent, Edward,Nam, Robert K.,Kelley, Shana O. (2013) 'Chip-Based Nanostructured Sensors Enable Accurate Identification and Classification of Circulating Tumor Cells in Prostate Cancer Patient Blood Samples'. Analytical Chemistry, 85 (11):398-403   [Details]
(2013)'Synthesis and Electrophilic Cyclization Reactions of Diphenyl 3-Methylpenta-1,2,4-trienyl Phosphine Oxide'
Ivanov, Ivaylo K.,Christov, Valerij C. (2013) 'Synthesis and Electrophilic Cyclization Reactions of Diphenyl 3-Methylpenta-1,2,4-trienyl Phosphine Oxide'. Synthetic Communications, 43 (66):800-809   [Details]
(2013)'Bifunctionalized Allenes. Part VIII. An Efficient and Varied Method for the Synthesis of 2-Sulfonylated Alka-2,3-Dienoates'
Ivanov, Ivaylo K.,Christov, Valerij Ch (2013) 'Bifunctionalized Allenes. Part VIII. An Efficient and Varied Method for the Synthesis of 2-Sulfonylated Alka-2,3-Dienoates'. Phosphorus Sulfur and Silicon and the Related Elements, 188 (77):913-919   [Details]
(2013)'Regio- and stereoselective Diels-Alder reaction of diphenyl 5-methylhexa-1,3,4-trien-3-yl phosphine oxide with N-(4-substituted-phenyl) maleimides and maleic anhydride'
Ivanov, Ivaylo K.,Ismailov, Ismail E.,Christov, Valerij Ch (2013) 'Regio- and stereoselective Diels-Alder reaction of diphenyl 5-methylhexa-1,3,4-trien-3-yl phosphine oxide with N-(4-substituted-phenyl) maleimides and maleic anhydride'. Arkivoc, :152-163   [Details]
(2013)'Bifunctionalized Allenes, Part IX: An Efficient Method for Regioselective Synthesis of 4-Heteroatom-Functionalized Allenecarboxylates'
Ivanov, Ivaylo K.,Parushev, Ivaylo D.,Christov, Valerij Ch (2013) 'Bifunctionalized Allenes, Part IX: An Efficient Method for Regioselective Synthesis of 4-Heteroatom-Functionalized Allenecarboxylates'. Heteroatom Chemistry, 24 (44):322-331   [Details]
(2013)'Synthesis, structural analysis and application of a series of solid-state fluorochromes-aryl hydrazones of 4-hydrazino-N-hexyl-1,8-naphthalimide'
Ivanov, Ivaylo P.,Dimitrova, Mashenka B.,Tasheva, Donka N.,Cheshmedzhieva, Diana V.,Lozanov, Valentin S.,Ilieva, Sonia V. (2013) 'Synthesis, structural analysis and application of a series of solid-state fluorochromes-aryl hydrazones of 4-hydrazino-N-hexyl-1,8-naphthalimide'. Tetrahedron, 69 (22):712-721   [Details]
(2013)'Nonlinear absorption properties of the charge states of nitrogen-vacancy centers in nanodiamonds'
Ivanov, Ivaylo P.,Li, Xiangping,Dolan, Philip R.,Gu, Min (2013) 'Nonlinear absorption properties of the charge states of nitrogen-vacancy centers in nanodiamonds'. Optics Letters, 38 (88):1358-1360   [Details]
(2013)'Computational insights for the AlkD base extrusion strategy'
Kossmann, Bradley R.,Ivanov, Ivaylo (2013) 'Computational insights for the AlkD base extrusion strategy'. Abstracts of Papers of the American Chemical Society, 246   [Details]
(2013)'Microbe-dependent CD11b(+) IgA(+) plasma cells mediate robust early-phase intestinal IgA responses in mice'
Kunisawa, Jun,Gohda, Masashi,Hashimoto, Eri,Ishikawa, Izumi,Higuchi, Morio,Suzuki, Yuji,Goto, Yoshiyuki,Panea, Casandra,Ivanov, Ivaylo I.,Sumiya, Risa,Aayam, Lamichhane,Wake, Taichi,Tajiri, So,Kurashima, Yosuke,Shikata, Shiori,Akira, Shizuo,Takeda, Kiyoshi,Kiyono, Hiroshi (2013) 'Microbe-dependent CD11b(+) IgA(+) plasma cells mediate robust early-phase intestinal IgA responses in mice'. Nature Communications, 4   [Details]
(2013)'A TRPC1 Protein-dependent Pathway Regulates Osteoclast Formation and Function'
Ong, E. Ching,Nesin, Vasyl,Long, Courtney L.,Bai, Chang-Xi,Guz, Jan L.,Ivanov, Ivaylo P.,Abramowitz, Joel,Birnbaumer, Lutz,Humphrey, Mary Beth,Tsiokas, Leonidas (2013) 'A TRPC1 Protein-dependent Pathway Regulates Osteoclast Formation and Function'. Journal of Biological Chemistry, 288 (3131):22219-22232   [Details]
(2013)'Conserved Structural Chemistry for Incision Activity in Structurally Non-homologous Apurinic/Apyrimidinic Endonuclease APE1 and Endonuclease IV DNA Repair Enzymes'
Tsutakawa, Susan E.,Shin, David S.,Mol, Clifford D.,Izumi, Tadahide,Arvai, Andrew S.,Mantha, Anil K.,Szczesny, Bartosz,Ivanov, Ivaylo N.,Hosfield, David J.,Maiti, Buddhadev,Pique, Mike E.,Frankel, Kenneth A.,Hitomi, Kenichi,Cunningham, Richard P.,Mitra, Sankar,Tainer, John A. (2013) 'Conserved Structural Chemistry for Incision Activity in Structurally Non-homologous Apurinic/Apyrimidinic Endonuclease APE1 and Endonuclease IV DNA Repair Enzymes'. Journal of Biological Chemistry, 288 (1212):8445-8455   [Details]
(2013)'Probing DNA clamps with single-molecule force spectroscopy'
Wang, Lin,Xu, Xiaojun,Kumar, Ravindra,Maiti, Buddhadev,Liu, C. Tony,Ivanov, Ivaylo,Lee, Tae-Hee,Benkovic, Stephen J. (2013) 'Probing DNA clamps with single-molecule force spectroscopy'. Nucleic Acids Research, 41 (1616):7804-7814   [Details]
(2013)'The Stringency of Start Codon Selection in the Filamentous Fungus Neurospora crassa'
Wei, Jiajie,Zhang, Ying,Ivanov, Ivaylo P.,Sachs, Matthew S. (2013) 'The Stringency of Start Codon Selection in the Filamentous Fungus Neurospora crassa'. Journal of Biological Chemistry, 288 (1313):9549-9562   [Details]
(2012)'Comparison of the activity levels and localization of dipeptidyl peptidase IV in normal and tumor human lung cells'
Dimitrova, Mashenka,Ivanov, Ivaylo,Todorova, Ralitza,Stefanova, Nadezhda,Moskova-Doumanova, Veselina,Topouzova-Hristova, Tanya,Saynova, Veselina,Stephanova, Elena (2012) 'Comparison of the activity levels and localization of dipeptidyl peptidase IV in normal and tumor human lung cells'. Tissue & Cell, 44 (22):74-79   [Details]
(2012)'Intestinal Commensal Microbes as Immune Modulators'
Ivanov, Ivaylo I.,Honda, Kenya (2012) 'Intestinal Commensal Microbes as Immune Modulators'. Cell Host & Microbe, 12 (44):496-508   [Details]
(2012)'Synthesis and electrophilic cyclization reactions of diphenyl 3-methylhexa-1,3,4-trien-3-yl phosphine oxide'
Ivanov, Ivaylo K.,Christov, Valerij Ch (2012) 'Synthesis and electrophilic cyclization reactions of diphenyl 3-methylhexa-1,3,4-trien-3-yl phosphine oxide'. Heteroatom Chemistry, 23 (44):345-351   [Details]
(2012)'Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5'
Loughran, Gary,Sachs, Matthew S.,Atkins, John F.,Ivanov, Ivaylo P. (2012) 'Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5'. Nucleic Acids Research, 40 (77):2898-2906   [Details]
(2012)'Repair complexes of FEN1 endonuclease, DNA, and Rad9-Hus1-Rad1 are distinguished from their PCNA counterparts by functionally important stability'
Querol-Audi, Jordi,Yan, Chunli,Xu, Xiaojun,Tsutakawa, Susan E.,Tsai, Miaw-Sheue,Tainer, John A.,Cooper, Priscilla K.,Nogales, Eva,Ivanov, Ivaylo (2012) 'Repair complexes of FEN1 endonuclease, DNA, and Rad9-Hus1-Rad1 are distinguished from their PCNA counterparts by functionally important stability'. Proceedings of the National Academy of Sciences of the United States of America, 109 (2222):8528-8533   [Details]
(2012)'Integrative modeling of protein/DNA complexes at the replication fork'
Ivanov, Ivaylo (2012) 'Integrative modeling of protein/DNA complexes at the replication fork'. Abstracts of Papers of the American Chemical Society, 243   [Details]
(2012)'Acquisition of a multifunctional IgA(+) plasma cell phenotype in the gut'
Fritz, Joerg H.,Rojas, Olga Lucia,Simard, Nathalie,McCarthy, Douglas D.,Hapfelmeier, Siegfried,Rubino, Stephen,Robertson, Susan J.,Larijani, Mani,Gosselin, Jean,Ivanov, Ivaylo I.,Martin, Alberto,Casellas, Rafael,Philpott, Dana J.,Girardin, Stephen E.,McCoy, Kathy D.,Macpherson, Andrew J.,Paige, Christopher J.,Gommerman, Jennifer L. (2012) 'Acquisition of a multifunctional IgA(+) plasma cell phenotype in the gut'. Nature, 481 (73807380)   [Details]
(2012)'Molecular dynamics'
Cheng, Xiaolin,Ivanov, Ivaylo (2012) 'Molecular dynamics'. Methods in molecular biology (Clifton, N.J.), 929 :243-85   [Details]
(2012)'Solution phase X-ray scattering and multiscale computational modeling reveal the structural dynamics of ubiqutinated PCNA'
Tsutakawa, Susan E.,Van Wynsberghe, Adam,Washington, M. Todd,Tainer, John A.,Zhuang, Zhihao,Ivanov, Ivaylo (2012) 'Solution phase X-ray scattering and multiscale computational modeling reveal the structural dynamics of ubiqutinated PCNA'. Abstracts of Papers of the American Chemical Society, 243   [Details]
(2012)'Electron microscopy and computational modeling reveal key structural aspects of the ternary assemblies of flap endonuclease 1 with sliding clamps and DNA'
Querol-Audi, Jordi,Yan, Chunli,Xu, Xiaojun,Tsutakawa, Susan E.,Tainer, John A.,Nogales, Eva,Ivanov, Ivaylo (2012) 'Electron microscopy and computational modeling reveal key structural aspects of the ternary assemblies of flap endonuclease 1 with sliding clamps and DNA'. Abstracts of Papers of the American Chemical Society, 243   [Details]
(2011)'Modulation of immune homeostasis by commensal bacteria'
Ivanov, Ivaylo I.,Littman, Dan R. (2011) 'Modulation of immune homeostasis by commensal bacteria'. Current Opinion in Microbiology, 14 (11):106-114   [Details]
(2011)'Ion Selectivity Mechanism in a Bacterial Pentameric Ligand-Gated Ion Channel'
Fritsch, Sebastian,Ivanov, Ivaylo,Wang, Hailong,Cheng, Xiaolin (2011) 'Ion Selectivity Mechanism in a Bacterial Pentameric Ligand-Gated Ion Channel'. Biophysical Journal, 100 (22):390-398   [Details]
(2011)'Histone H4 Acetylation Differentially Modulates Arginine Methylation by an in Cis Mechanism'
Feng, You,Wang, Juxian,Asher, Sabrina,Hoang, Linh,Guardiani, Carlo,Ivanov, Ivaylo,Zheng, Y. George (2011) 'Histone H4 Acetylation Differentially Modulates Arginine Methylation by an in Cis Mechanism'. Journal of Biological Chemistry, 286 (2323):20323-20334   [Details]
(2011)'DEVELOPMENT OF A FLUORESCENT METHOD FOR THE IN SITU IMAGING OF GAMMA-GLUTAMYL TRANSPEPTIDASE ACTIVITY. COMPARISON WITH THE METHODS IN USE'
Dimitrova, Mashenka,Tasheva, Donka,Ivanov, Ivaylo (2011) 'DEVELOPMENT OF A FLUORESCENT METHOD FOR THE IN SITU IMAGING OF GAMMA-GLUTAMYL TRANSPEPTIDASE ACTIVITY. COMPARISON WITH THE METHODS IN USE'. Comptes Rendus De L Academie Bulgare Des Sciences, 64 (1212):1701-1706   [Details]
(2011)'Developmental study of tripeptidyl peptidase I activity in the mouse central nervous system and peripheral organs'
Dimitrova, Mashenka,Deleva, Denislava,Pavlova, Velichka,Ivanov, Ivaylo (2011) 'Developmental study of tripeptidyl peptidase I activity in the mouse central nervous system and peripheral organs'. Cell and Tissue Research, 346 (22):141-149   [Details]
(2011)'STUDY ON TRIPEPTIDYL PEPTIDASE I ACTIVITY IN CULTURED HUMAN PANCREATIC ADENOCARCINOMA CELLS'
Dimitrova, Mashenka,Apostolova, Maria,Ivanov, Ivaylo,Pavlova, Velichka,Stephanova, Elena,Nikolova, Elena (2011) 'STUDY ON TRIPEPTIDYL PEPTIDASE I ACTIVITY IN CULTURED HUMAN PANCREATIC ADENOCARCINOMA CELLS'. Comptes Rendus De L Academie Bulgare Des Sciences, 64 (33):383-388   [Details]
(2011)'Experimental and theoretical study on the absorption and fluorescence properties of substituted aryl hydrazones of 1,8-naphthalimide'
Cheshmedzhieva, Diana,Ivanova, Plamena,Stoyanov, Stanimir,Tasheva, Donka,Dimitrova, Mashenka,Ivanovc, Ivaylo,Ilieva, Sonia (2011) 'Experimental and theoretical study on the absorption and fluorescence properties of substituted aryl hydrazones of 1,8-naphthalimide'. Physical Chemistry Chemical Physics, 13 (4141):18530-18538   [Details]
(2011)'European guidelines on the clinical management of HIV-1 tropism testing'
Vandekerckhove, L. P. R.,Wensing, A. M. J.,Kaiser, R.,Brun-Vezinet, F.,Clotet, B.,De Luca, A.,Dressler, S.,Garcia, F.,Geretti, A. M.,Klimkait, T.,Korn, K.,Masquelier, B.,Perno, C. F.,Schapiro, J. M.,Soriano, V.,Sonnerborg, A.,Vandamme, A. M.,Verhofstede, C.,Walter, H.,Zazzi, M.,Boucher, C. A. B.,Puchhammer-Stockl, Elisabeth,Van Laethem, Kristel,Ivanov, Ivaylo A.,Beshkov, Danail A.,Lepej, Snjezana Zidovec,Kostrikis, Leondios G.,Linka, Marek,Nielsen, Claus,Zilmer, Kai,Liitsola, Kirsi,Braun, Patrick,Daeumer, Martin,Obermeier, Martin,Paraskevis, Dimitrios,Minarovits, Janos,Coughlin, Suzie,de Gascun, Cillian,Grossman, Zehava,Balotta, Claudia,Rusconi, Stefano,Svicher, Valentina,Kolupajeva, Tatjana,Griskevicius, Algirdas,Schmit, Jean-Claude C.,Schuurman, Rob,Asjo, Birgitta,Horban, Andrzej J. W.,C (2011) 'European guidelines on the clinical management of HIV-1 tropism testing'. Lancet Infectious Diseases, 11 (55):394-407   [Details]
(2011)'Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species'
Atarashi, Koji,Tanoue, Takeshi,Shima, Tatsuichiro,Imaoka, Akemi,Kuwahara, Tomomi,Momose, Yoshika,Cheng, Genhong,Yamasaki, Sho,Saito, Takashi,Ohba, Yusuke,Taniguchi, Tadatsugu,Takeda, Kiyoshi,Hori, Shohei,Ivanov, Ivaylo I.,Umesaki, Yoshinori,Itoh, Kikuji,Honda, Kenya (2011) 'Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species'. Science, 331   [Details]
(2011)'Solution X-ray scattering combined with computational modeling reveals multiple conformations of covalently bound ubiquitin on PCNA'
Tsutakawa, Susan E.,Van Wynsberghe, Adam W.,Freudenthal, Bret D.,Weinacht, Christopher P.,Gakhar, Lokesh,Washington, M. Todd,Zhuang, Zhihao,Tainer, John A.,Ivanov, Ivaylo (2011) 'Solution X-ray scattering combined with computational modeling reveals multiple conformations of covalently bound ubiquitin on PCNA'. Proceedings of the National Academy of Sciences of the United States of America, 108 (4343):17672-17677   [Details]
(2011)'The Genome of Th17 Cell-Inducing Segmented Filamentous Bacteria Reveals Extensive Auxotrophy and Adaptations to the Intestinal Environment'
Sczesnak, Andrew,Segata, Nicola,Qin, Xiang,Gevers, Dirk,Petrosino, Joseph F.,Huttenhower, Curtis,Littman, Dan R.,Ivanov, Ivaylo I. (2011) 'The Genome of Th17 Cell-Inducing Segmented Filamentous Bacteria Reveals Extensive Auxotrophy and Adaptations to the Intestinal Environment'. Cell Host & Microbe, 10 (33):260-272   [Details]
(2011)'Absence of N addition facilitates B cell development, but impairs immune responses'
Schelonka, Robert L.,Ivanov, Ivaylo I.,Vale, Andre M.,Dimmitt, Reed A.,Khaled, Mahnaz,Schroeder, Harry W., Jr. (2011) 'Absence of N addition facilitates B cell development, but impairs immune responses'. Immunogenetics, 63 (99):599-609   [Details]
(2011)'New insights into the GABA(A) receptor structure and orthosteric ligand binding: Receptor modeling guided by experimental data'
Sander, Tommy,Frolund, Bente,Bruun, Anne Techau,Ivanov, Ivaylo,McCammon, James Andrew,Balle, Thomas (2011) 'New insights into the GABA(A) receptor structure and orthosteric ligand binding: Receptor modeling guided by experimental data'. Proteins-Structure Function and Bioinformatics, 79 (55):1458-1477   [Details]
(2011)'Notch2 Receptor Signaling Controls Functional Differentiation of Dendritic Cells in the Spleen and Intestine'
Lewis, Kanako L.,Caton, Michele L.,Bogunovic, Milena,Greter, Melanie,Grajkowska, Lucja T.,Ng, Dennis,Klinakis, Apostolos,Charo, Israel F.,Jung, Steffen,Gommerman, Jennifer L.,Ivanov, Ivaylo I.,Liu, Kang,Merad, Miriam,Reizis, Boris (2011) 'Notch2 Receptor Signaling Controls Functional Differentiation of Dendritic Cells in the Spleen and Intestine'. Immunity, 35 (55):780-791   [Details]
(2011)'Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences'
Ivanov, Ivaylo P.,Firth, Andrew E.,Michel, Audrey M.,Atkins, John F.,Baranov, Pavel V. (2011) 'Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences'. Nucleic Acids Research, 39 (1010):4220-4234   [Details]
(2010)'Gut-Residing Segmented Filamentous Bacteria Drive Autoimmune Arthritis via T Helper 17 Cells'
Wu, Hsin-Jung,Ivanov, Ivaylo I.,Darce, Jaime,Hattori, Kimie,Shima, Tatsuichiro,Umesaki, Yoshinori,Littman, Dan R.,Benoist, Christophe,Mathis, Diane (2010) 'Gut-Residing Segmented Filamentous Bacteria Drive Autoimmune Arthritis via T Helper 17 Cells'. Immunity, 32 (66):815-827   [Details]
(2010)'Mechanism of sliding clamp opening by the clamp loader RFC: Insight from atomistic simulations'
Ivanov, Ivaylo,McCammon, J. Andrew,Tainer, John A. (2010) 'Mechanism of sliding clamp opening by the clamp loader RFC: Insight from atomistic simulations'. Abstracts of Papers of the American Chemical Society, 240   [Details]
(2010)'Interplay of AAA plus molecular machines, DNA repair enzymes and sliding clamps at the replication fork: A multiscale approach to modeling replisome assembly and function'
Ivanov, Ivaylo,McCammon, J. Andrew,Tainer, John A. (2010) 'Interplay of AAA plus molecular machines, DNA repair enzymes and sliding clamps at the replication fork: A multiscale approach to modeling replisome assembly and function'. Abstracts of Papers of the American Chemical Society, 240   [Details]
(2010)'Innate lymphoid cells drive interleukin-23-dependent innate intestinal pathology'
Buonocore, Sofia,Ahern, Philip P.,Uhlig, Holm H.,Ivanov, Ivaylo I.,Littman, Dan R.,Maloy, Kevin J.,Powrie, Fiona (2010) 'Innate lymphoid cells drive interleukin-23-dependent innate intestinal pathology'. Nature, 464 (72937293):1371-1375   [Details]
(2010)'Sequence Requirements for Ribosome Stalling by the Arginine Attenuator Peptide'
Spevak, Christina C.,Ivanov, Ivaylo P.,Sachs, Matthew S. (2010) 'Sequence Requirements for Ribosome Stalling by the Arginine Attenuator Peptide'. Journal of Biological Chemistry, 285 (5252):40933-40942   [Details]
(2010)'Recognition of the Ring-Opened State of Proliferating Cell Nuclear Antigen by Replication Factor C Promotes Eukaryotic Clamp-Loading'
Tainer, John A.,McCammon, J. Andrew,Ivanov, Ivaylo (2010) 'Recognition of the Ring-Opened State of Proliferating Cell Nuclear Antigen by Replication Factor C Promotes Eukaryotic Clamp-Loading'. Journal of the American Chemical Society, 132 (2121):7372-7378   [Details]
(2010)'Induction of gut mucosal Th17 cells by segmented filamentous bacteria'
Ivanov, Ivaylo I.,Manel, Nicolas (2010) 'Induction of gut mucosal Th17 cells by segmented filamentous bacteria'. M S-Medecine Sciences, 26 (44):352-355   [Details]
(2010)'Initiation context modulates autoregulation of eukaryotic translation initiation factor 1 (eIF1)'
Ivanov, Ivaylo P.,Loughran, Gary,Sachs, Matthew S.,Atkins, John F. (2010) 'Initiation context modulates autoregulation of eukaryotic translation initiation factor 1 (eIF1)'. Proceedings of the National Academy of Sciences of the United States of America, 107 (4242):18056-18060   [Details]
(2010)'The CDR-H3 Repertoire from TdT-Deficient Adult Bone Marrow Is a Close, but Not Exact, Homologue of the CDR-H3 Repertoire from Perinatal Liver'
Schelonka, Robert L.,Ivanov, Ivaylo I.,Vale, Andre M.,Szymanska, Ewa,Zemlin, Michael,Gartland, G. Larry,Schroeder, Harry W., Jr. (2010) 'The CDR-H3 Repertoire from TdT-Deficient Adult Bone Marrow Is a Close, but Not Exact, Homologue of the CDR-H3 Repertoire from Perinatal Liver'. Journal of Immunology, 185 (1010):6075-6084   [Details]
(2010)'Recurrent Emergence of Catalytically Inactive Ornithine Decarboxylase Homologous Forms That Likely Have Regulatory Function'
Ivanov, Ivaylo P.,Firth, Andrew E.,Atkins, John F. (2010) 'Recurrent Emergence of Catalytically Inactive Ornithine Decarboxylase Homologous Forms That Likely Have Regulatory Function'. Journal of Molecular Evolution, 70 (33):289-302   [Details]
(2010)'A profusion of upstream open reading frame mechanisms in polyamine-responsive translational regulation'
Ivanov, Ivaylo P.,Atkins, John F.,Michael, Antony J. (2010) 'A profusion of upstream open reading frame mechanisms in polyamine-responsive translational regulation'. Nucleic Acids Research, 38 (22):353-359   [Details]
(2010)'Multiscale Modeling of PCNA - Ubiquitin Interactions'
Ivanov, Ivaylo,Van Wynsberghe, Adam,Tainer, John A.,McCammon, J. Andrew (2010) 'Multiscale Modeling of PCNA - Ubiquitin Interactions'. Biophysical Journal, 98 (33)   [Details]
(2010)'Autoregulatory Frameshifting in Antizyme Gene Expression Governs Polyamine Levels from Yeast to Mammals'
Ivanov, Ivaylo P.,Matsufuji, Senya (2010) 'Autoregulatory Frameshifting in Antizyme Gene Expression Governs Polyamine Levels from Yeast to Mammals'. Recoding: Expansion of Decoding Rules Enriches Gene Expression, 24 :281-300   [Details]
(2009)'Molecular-Dynamics Simulations of ELIC-a Prokaryotic Homologue of the Nicotinic Acetylcholine Receptor'
Cheng, Xiaolin,Ivanov, Ivaylo,Wang, Hailong,Sine, Steven M.,McCammon, J. Andrew (2009) 'Molecular-Dynamics Simulations of ELIC-a Prokaryotic Homologue of the Nicotinic Acetylcholine Receptor'. Biophysical Journal, 96 (1111):4502-4513   [Details]
(2009)'Evaluation of recombinant caspase specificity by competitive substrates'
Benkova, Bistra,Lozanov, Valentin,Ivanov, Ivaylo P.,Mitev, Vanio (2009) 'Evaluation of recombinant caspase specificity by competitive substrates'. Analytical Biochemistry, 394   [Details]
(2009)'DIPEPTIDYL PEPTIDASE IV (CD26) ACTIVITY IN DIFFERENT LYMPHOCYTE POPULATIONS OF HUMAN PERIPHERAL BLOOD AFTER MITOGEN STIMULATION'
Dimitrova, Mashenka,Ivanov, Ivaylo,Georgieva, Lillia,Nikolova, Elena (2009) 'DIPEPTIDYL PEPTIDASE IV (CD26) ACTIVITY IN DIFFERENT LYMPHOCYTE POPULATIONS OF HUMAN PERIPHERAL BLOOD AFTER MITOGEN STIMULATION'. Comptes Rendus De L Academie Bulgare Des Sciences, 62 (55):603-608   [Details]
(2009)'Synthesis and use of 4-peptidylhydrazido-N-hexyl-1,8-naphthalimides as fluorogenic histochemical substrates for dipeptidyl peptidase IV and tripeptidyl peptidase I'
Ivanov, Ivaylo,Tasheva, Donka,Todorova, Ralitza,Dimitrova, Mashenka (2009) 'Synthesis and use of 4-peptidylhydrazido-N-hexyl-1,8-naphthalimides as fluorogenic histochemical substrates for dipeptidyl peptidase IV and tripeptidyl peptidase I'. European Journal of Medicinal Chemistry, 44 (11):384-392   [Details]
(2009)'Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria'
Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya,Littman, Dan R. (2009) 'Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria'. Cell, 139 (33):485-498   [Details]
(2009)'ROR gamma-Expressing Th17 Cells Induce Murine Chronic Intestinal Inflammation via Redundant Effects of IL-17A and IL-17F'
Leppkes, Moritz,Becker, Christoph,Ivanov, Ivaylo I.,Hirth, Sebastian,Wirtz, Stefan,Neufert, Clemens,Pouly, Sandrine,Murphy, Andrew J.,Valenzuela, David M.,Yancopoulos, George D.,Becher, Burkhard,Littman, Dan R.,Neurath, Markus F. (2009) 'ROR gamma-Expressing Th17 Cells Induce Murine Chronic Intestinal Inflammation via Redundant Effects of IL-17A and IL-17F'. Gastroenterology, 136 (11):257-267   [Details]
(2009)'GSE18348: Induction of intestinal Th17 cells by segmented filamentous bacteria'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSE18348: Induction of intestinal Th17 cells by segmented filamentous bacteria'. Gene Expression Omnibus,   [Details]
(2009)'GSM458048: JAX1'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458048: JAX1'. Gene Expression Omnibus,   [Details]
(2009)'GSM458049: JAX2'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458049: JAX2'. Gene Expression Omnibus,   [Details]
(2009)'GSM458050: JAX3'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458050: JAX3'. Gene Expression Omnibus,   [Details]
(2009)'GSM458051: JAX4'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458051: JAX4'. Gene Expression Omnibus,   [Details]
(2009)'GSM458052: JAXCoh1'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458052: JAXCoh1'. Gene Expression Omnibus,   [Details]
(2009)'GSM458053: JAXCoh2'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458053: JAXCoh2'. Gene Expression Omnibus,   [Details]
(2009)'GSM458054: JAXCoh3'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458054: JAXCoh3'. Gene Expression Omnibus,   [Details]
(2009)'GSM458055: JAXCoh4'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458055: JAXCoh4'. Gene Expression Omnibus,   [Details]
(2009)'GSM458056: GF1'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458056: GF1'. Gene Expression Omnibus,   [Details]
(2009)'GSM458057: GF2'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458057: GF2'. Gene Expression Omnibus,   [Details]
(2009)'GSM458058: GF3'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458058: GF3'. Gene Expression Omnibus,   [Details]
(2009)'GSM458059: GFSFB1'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458059: GFSFB1'. Gene Expression Omnibus,   [Details]
(2009)'GSM458060: GFSFB2'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458060: GFSFB2'. Gene Expression Omnibus,   [Details]
(2009)'GSM458061: GFSFB3'
Littman, Dan,Ivanov, Ivaylo I.,Atarashi, Koji,Manel, Nicolas,Brodie, Eoin L.,Shima, Tatsuichiro,Karaoz, Ulas,Wei, Dongguang,Goldfarb, Katherine C.,Santee, Clark A.,Lynch, Susan V.,Tanoue, Takeshi,Imaoka, Akemi,Itoh, Kikuji,Takeda, Kiyoshi,Umesaki, Yoshinori,Honda, Kenya (2009) 'GSM458061: GFSFB3'. Gene Expression Omnibus,   [Details]
(2009)'Peptide substrate for caspase-3 with 2-aminoacridone as reporting group'
Lozanov, Valentin,Ivanov, Ivaylo P.,Benkova, Bistra,Mitev, Vanio (2009) 'Peptide substrate for caspase-3 with 2-aminoacridone as reporting group'. Amino Acids, 36 (33):581-586   [Details]
(2009)'Influence of the transcription factor ROR gamma t on the development of NKp46(+) cell populations in gut and skin'
Luci, Carmelo,Reynders, Ana,Ivanov, Ivaylo I.,Cognet, Celine,Chiche, Laurent,Chasson, Lionel,Hardwigsen, Jean,Anguiano, Esperanza,Banchereau, Jacques,Chaussabel, Damien,Dalod, Marc,Littman, Dan R.,Vivier, Eric,Tomasello, Elena (2009) 'Influence of the transcription factor ROR gamma t on the development of NKp46(+) cell populations in gut and skin'. Nature Immunology, 10 (11):75-82   [Details]
(2009)'Lymphoid tissue inducer-like cells are an innate source of IL-17 and IL-22'
Takatori, Hiroaki,Kanno, Yuka,Watford, Wendy T.,Tato, Cristina M.,Weiss, Greta,Ivanov, Ivaylo I.,Littman, Dan R.,O'Shea, John J. (2009) 'Lymphoid tissue inducer-like cells are an innate source of IL-17 and IL-22'. Journal of Experimental Medicine, 206 (11):35-41   [Details]
(2009)'Do N-terminal nucleophile hydrolases indeed have a single amino acid catalytic center?'
Zhiryakova, Diana,Ivanov, Ivaylo,Ilieva, Sonya,Guncheva, Maya,Galunsky, Boris,Stambolieva, Nicolina (2009) 'Do N-terminal nucleophile hydrolases indeed have a single amino acid catalytic center?'. Febs Journal, 276 (99):2589-2598   [Details]
(2009)'Characterizing Loop Dynamics and Ligand Recognition in Human- and Avian-Type Influenza Neuraminidases via Generalized Born Molecular Dynamics and End-Point Free Energy Calculations'
Amaro, Rommie E.,Cheng, Xiaolin,Ivanov, Ivaylo,Xu, Dong,McCammon, J. Andrew (2009) 'Characterizing Loop Dynamics and Ligand Recognition in Human- and Avian-Type Influenza Neuraminidases via Generalized Born Molecular Dynamics and End-Point Free Energy Calculations'. Journal of the American Chemical Society, 131   [Details]
(2009)'Quantitation of the homocysteine content in wine'
Benkova, Bistra,Lozanov, Valentin,Ivanov, Ivaylo P.,Kalenderova, Silvia,Stoev, Georgy,Yordanova, Nadezhda,Milchova, Monika,Mitev, Vanio (2009) 'Quantitation of the homocysteine content in wine'. European Food Research and Technology, 230   [Details]
(2009)'DISTRIBUTION OF TRIPEPTIDYL PEPTIDASE I ACTIVITY IN THE RAT BRAIN AND SPINAL CORD'
Dimitrova, Mashenka,Ivanov, Ivaylo,Deleva, Denislava (2009) 'DISTRIBUTION OF TRIPEPTIDYL PEPTIDASE I ACTIVITY IN THE RAT BRAIN AND SPINAL CORD'. Comptes Rendus De L Academie Bulgare Des Sciences, 62 (66):729-734   [Details]
(2008)'Dynamics of the acetylcholinesterase tetramer'
Gorfe, Alemayehu A.,Chang, Chia-En A.,Ivanov, Ivaylo,McCammon, J. Andrew (2008) 'Dynamics of the acetylcholinesterase tetramer'. Biophysical Journal, 94 (44):1144-1154   [Details]
(2008)'PHYS 534-Solvation structure and dynamics of aqueous L-glutamic acid'
Ivanov, Ivaylo,Baron, Riccardo,McCammon, J. Andrew (2008) 'PHYS 534-Solvation structure and dynamics of aqueous L-glutamic acid'. Abstracts of Papers American Chemical Society, 236 :543-543   [Details]
(2008)'PHYS 301-Mechanism of sliding clamp opening by the eukaryotic clamp loader Replication Factor C'
Ivanov, Ivaylo,Tainer, John A.,McCammon, J. Andrew (2008) 'PHYS 301-Mechanism of sliding clamp opening by the eukaryotic clamp loader Replication Factor C'. Abstracts of Papers of the American Chemical Society, 236   [Details]
(2008)'PHYS 301-Mechanism of sliding clamp opening by the eukaryotic clamp loader Replication Factor C'
Ivanov, Ivaylo,Trainer, John A.,McCammon, J. Andrew (2008) 'PHYS 301-Mechanism of sliding clamp opening by the eukaryotic clamp loader Replication Factor C'. Abstracts of Papers American Chemical Society, 236 :529-529   [Details]
(2008)'Specific Microbiota Direct the Differentiation of IL-17-Producing T-Helper Cells in the Mucosa of the Small Intestine'
Ivanov, Ivaylo I.,Frutos, Rosa de Llanos,Manel, Nicolas,Yoshinaga, Keiji,Rifkin, Daniel B.,Sartor, R. Balfour,Finlay, B. Brett,Littman, Dan R. (2008) 'Specific Microbiota Direct the Differentiation of IL-17-Producing T-Helper Cells in the Mucosa of the Small Intestine'. Cell Host & Microbe, 4 (44):337-349   [Details]
(2008)'A crucial role of Rorgamma expressing TH17 cells in chronic intestinal inflammation'
Leppkes, Moritz,Becker, Chnstoph,Wirtz, Stefan J.,Ivanov, Ivaylo I.,Neufert, Clemens,Murphy, Andrew J.,Valenzuela, David,Yancopoulos, George,Nesbitt, Erin,Galle, Peter R.,Littman, Dan R.,Neurath, Markus F. (2008) 'A crucial role of Rorgamma expressing TH17 cells in chronic intestinal inflammation'. Gastroenterology, 134 (44)   [Details]
(2008)'Synthetic mimics of antimicrobial peptides'
Som, Abhigyan,Vemparala, Satyavani,Ivanov, Ivaylo,Tew, Gregory N. (2008) 'Synthetic mimics of antimicrobial peptides'. Biopolymers, 90 (22):83-93   [Details]
(2008)'Requirement for lymphoid tissue-inducer cells in isolated follicle formation and T cell-independent immunoglobulin a generation in the gut'
Tsuji, Masayuki,Suzuki, Keiichiro,Kitamura, Hiroshi,Maruya, Mikako,Kinoshita, Kazuo,Ivanov, Ivaylo I.,Itoh, Kikuji,Littman, Dan R.,Fagarasan, Sidonia (2008) 'Requirement for lymphoid tissue-inducer cells in isolated follicle formation and T cell-independent immunoglobulin a generation in the gut'. Immunity, 29 (22):261-271   [Details]
(2008)'IL-17 is Required for CD4-Mediated Graft-Versus-Host Disease'
Willis-Kappel, Lucy,Goldberg, Gabrielle,Ivanov, Ivaylo,Suh, David,King, Christopher,Ligh, Cassandra,Smith, Odette,Iwakura, Yoichiro,Littman, Dan R.,van den Brink, Marcel R. M. (2008) 'IL-17 is Required for CD4-Mediated Graft-Versus-Host Disease'. FASEB Journal, 22   [Details]
(2008)'TGF-beta-induced Foxp3 inhibits T(H)17 cell differentiation by antagonizing ROR gamma t function'
Zhou, Liang,Lopes, Jared E.,Chong, Mark M. W.,Ivanov, Ivaylo I.,Min, Roy,Victora, Gabriel D.,Shen, Yuelei,Du, Jianguang,Rubtsov, Yuri P.,Rudensky, Alexander Y.,Ziegler, Steven F.,Littman, Dan R. (2008) 'TGF-beta-induced Foxp3 inhibits T(H)17 cell differentiation by antagonizing ROR gamma t function'. Nature, 453 (71927192)   [Details]
(2008)'Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs'
Bekaert, Michael,Ivanov, Ivaylo P.,Atkins, John F.,Baranov, Pavel V. (2008) 'Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs'. Bmc Bioinformatics, 9   [Details]
(2007)'Heterosubtypic immunity to influenza a virus infection requires a properly diversified antibody repertoire'
Nguyen, Huan H.,Zemlin, Michael,Ivanov, Ivaylo I.,Andrasi, Judit,Zeinlin, Cosima,Vu, Huong L.,Schelonka, Robert,Schroeder, Harry W., Jr.,Mestecky, Jiri (2007) 'Heterosubtypic immunity to influenza a virus infection requires a properly diversified antibody repertoire'. Journal of Virology, 81 (1717):9331-9338   [Details]
(2007)'Ribosomal frameshifting in decoding antizyme mRNAs from yeast and protists to humans: close to 300 cases reveal remarkable diversity despite underlying conservation'
Ivanov, Ivaylo P.,Atkins, John F. (2007) 'Ribosomal frameshifting in decoding antizyme mRNAs from yeast and protists to humans: close to 300 cases reveal remarkable diversity despite underlying conservation'. Nucleic Acids Research, 35 (66):1842-1858   [Details]
(2007)'Transcriptional regulation of Th17 cell differentiation'
Ivanov, Ivaylo I.,Zhou, Liang,Littman, Dan R. (2007) 'Transcriptional regulation of Th17 cell differentiation'. Seminars in Immunology, 19 (66):409-417   [Details]
(2007)'Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV'
Ivanov, Ivaylo,Tainer, John A.,McCammon, J. Andrew (2007) 'Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV'. Proceedings of the National Academy of Sciences of the United States of America, 104 (55):1465-1470   [Details]
(2007)'Nanosecond-timescale conformational dynamics of the human alpha 7 nicotinic acetylcholine receptor'
Cheng, Xiaolin,Ivanov, Ivaylo,Wang, Hailong,Sine, Steven M.,McCammon, J. Andrew (2007) 'Nanosecond-timescale conformational dynamics of the human alpha 7 nicotinic acetylcholine receptor'. Biophysical Journal, 93 (88):2622-2634   [Details]
(2007)'PHYS 705-Multiscale modeling of gating motion in nicotinic acetylcholine receptors'
Cheng, Xiaolin,Ivanov, Ivaylo,McCammon, J. Andrew (2007) 'PHYS 705-Multiscale modeling of gating motion in nicotinic acetylcholine receptors'. Abstracts of Papers of the American Chemical Society, 234   [Details]
(2007)'Novel functions and transport mechanism associated with the Ca2+-dependent cell adhesion molecule DdCAD-1 in Dictyostelium'
Sriskanthadevan, Shrivani,Ivanov, Ivaylo,Yang, Chunzhong,Siu, Chi-Hung (2007) 'Novel functions and transport mechanism associated with the Ca2+-dependent cell adhesion molecule DdCAD-1 in Dictyostelium'. Recent Research Developments in Cell Biology, 3 :9-21   [Details]
(2007)'PHYS 270-Barriers to ion translocation in cationic and anionic receptors from the Cys-loop family'
Ivanov, Ivaylo,Cheng, Xiaolin,Sine, Steven M.,McCammon, J. Andrew (2007) 'PHYS 270-Barriers to ion translocation in cationic and anionic receptors from the Cys-loop family'. Abstracts of Papers of the American Chemical Society, 234   [Details]
(2007)'Barriers to ion translocation in cationic and anionic receptors from the Cys-loop family'
Ivanov, Ivaylo,Cheng, Xiaolin,Sine, Steven M.,McCammon, J. Andrew (2007) 'Barriers to ion translocation in cationic and anionic receptors from the Cys-loop family'. Journal of the American Chemical Society, 129 (2626):8217-8224   [Details]
(2007)'Barriers to ion translocation in the human alpha 7 nicotinic acetylcholine receptor'
Ivanov, Ivaylo,Cheng, Xiaolin,McCammon, J. Andrew (2007) 'Barriers to ion translocation in the human alpha 7 nicotinic acetylcholine receptor'. Biophysical Journal,   [Details]
(2007)'Alkatrienyl sulfoxides and sulfones, VIII: Diels-Alder reaction of 3-methylpenta-1,2,4-trienyl phenyl sulfoxide with maleic anhydride'
Christov, Valerij C.,Ivanov, Ivaylo K. (2007) 'Alkatrienyl sulfoxides and sulfones, VIII: Diels-Alder reaction of 3-methylpenta-1,2,4-trienyl phenyl sulfoxide with maleic anhydride'. Synthetic Communications, 37 (1818):3201-3209   [Details]
(2007)'IL-6 programs TH-17 cell differentiation by promoting the sequential engagement of the IL-21 and IL-23 pathways'
Zhou, Liang,Ivanov, Ivaylo I.,Spolski, Rosanne,Min, Roy,Shenderov, Kevin,Egawa, Takeshi,Levy, David E.,Leonard, Warren J.,Littman, Dan R. (2007) 'IL-6 programs TH-17 cell differentiation by promoting the sequential engagement of the IL-21 and IL-23 pathways'. Cytokine, 39 (11):49-49   [Details]
(2007)'IL-6 programs TH-17 cell differentiation by promoting sequential engagement of the IL-21 and IL-23 pathways'
Zhou, Liang,Ivanov, Ivaylo I.,Spolski, Rosanne,Min, Roy,Shenderov, Kevin,Egawa, Takeshi,Levy, David E.,Leonard, Warren J.,Littman, Dan R. (2007) 'IL-6 programs TH-17 cell differentiation by promoting sequential engagement of the IL-21 and IL-23 pathways'. Nature Immunology, 8 (99):967-974   [Details]
(2006)'BIOL 189 - Ab initio molecular dynamics reveals striking reorganization of the trinuclear metal cluster of endonuclease IV during catalysis'
Ivanov, Ivaylo,Tainer, John A.,McCammon, J. Andrew (2006) 'BIOL 189 - Ab initio molecular dynamics reveals striking reorganization of the trinuclear metal cluster of endonuclease IV during catalysis'. Abstracts of Papers of the American Chemical Society, 232 :948-948   [Details]
(2006)'Relative pK(a) values from first-principles molecular dynamics: The case of histidine deprotonation'
Ivanov, I.,Chen, B.,Raugei, S.,Klein, M. L. (2006) 'Relative pK(a) values from first-principles molecular dynamics: The case of histidine deprotonation'. Journal of Physical Chemistry B, 110 (1212):6365-6371   [Details]
(2006)'Identification of polymorphisms and balancing selection in the male infertility candidate gene, ornithine decarboxylase antizyme 3'
Christensen, Greg L.,Ivanov, Ivaylo P.,Wooding, Stephen P.,Atkins, John F.,Mielnik, Anna,Schlegel, Peter N.,Carrell, Douglas T. (2006) 'Identification of polymorphisms and balancing selection in the male infertility candidate gene, ornithine decarboxylase antizyme 3'. Bmc Medical Genetics, 7   [Details]
(2006)'Sequencing and haplotype analysis of the Activator of CREM in the Testis (ACT) gene in populations of fertile and infertile males'
Christensen, G. L.,Wooding, S. P.,Ivanov, I. P.,Atkins, J. F.,Carrell, D. T. (2006) 'Sequencing and haplotype analysis of the Activator of CREM in the Testis (ACT) gene in populations of fertile and infertile males'. Molecular Human Reproduction, 12 (44):257-262   [Details]
(2006)'Proliferating cell nuclear antigen loaded onto double-stranded DNA: dynamics, minor groove interactions and functional implications'
Ivanov, Ivaylo,Chapados, Brian R.,McCammon, J. Andrew,Tainer, John A. (2006) 'Proliferating cell nuclear antigen loaded onto double-stranded DNA: dynamics, minor groove interactions and functional implications'. Nucleic Acids Research, 34 (2020):6023-6033   [Details]
(2006)'Forced usage of positively charged amino acids in immunoglobulin CDR-H3 impairs B cell development and antibody production'
Ippolito, G. C.,Schelonka, R. L.,Zemlin, M.,Ivanov, II,Kobayashi, R.,Zemlin, C.,Gartland, G. L.,Nitschke, L.,Pelkonen, J.,Fujihashi, K.,Rajewsky, K.,Schroeder, H. W. (2006) 'Forced usage of positively charged amino acids in immunoglobulin CDR-H3 impairs B cell development and antibody production'. Journal of Experimental Medicine, 203 (66):1567-1578   [Details]
(2006)'Ab initio calculations of intramolecular parameters for a class of arylamide polymers'
Vemparala, S.,Ivanov, I.,Pophristic, V.,Spiegel, K.,Klein, M. L. (2006) 'Ab initio calculations of intramolecular parameters for a class of arylamide polymers'. Journal of Computational Chemistry, 27 (66):693-700   [Details]
(2006)'Phylogenetic shadowing of a histamine-gated chloride channel involved in insect vision'
Iovchev, M.,Boutanaev, A.,Ivanov, I.,Wolstenholme, A.,Nurminsky, D.,Semenov, E. (2006) 'Phylogenetic shadowing of a histamine-gated chloride channel involved in insect vision'. Insect Biochemistry and Molecular Biology, 36 (11):10-17   [Details]
(2006)'Evolutionary specialization of recoding: Frameshifting in the expression of S-cerevisiae antizyme mRNA is via an atypical antizyme shift site but is still+1'
Ivanov, I. P.,Gesteland, R. F.,Atkins, J. F. (2006) 'Evolutionary specialization of recoding: Frameshifting in the expression of S-cerevisiae antizyme mRNA is via an atypical antizyme shift site but is still+1'. Rna-a Publication of the Rna Society, 12 (33):332-337   [Details]
(2006)'Identification of polymorphisms in the Hrb, GOPC, and Csnk2a2 genes in two men with globozoospermia'
Christensen, G. L.,Ivanov, I. P.,Atkins, J. E.,Campbell, B.,Carrell, D. T. (2006) 'Identification of polymorphisms in the Hrb, GOPC, and Csnk2a2 genes in two men with globozoospermia'. Journal of Andrology, 27 (11):11-15   [Details]
(2006)'Controlling the shape and flexibility of arylamides: A combined ab initio, ab initio molecular dynamics, and classical molecular dynamics study'
Pophristic, V.,Vemparala, S.,Ivanov, I.,Liu, Z. W.,Klein, M. L.,DeGrado, W. F. (2006) 'Controlling the shape and flexibility of arylamides: A combined ab initio, ab initio molecular dynamics, and classical molecular dynamics study'. Journal of Physical Chemistry B, 110 (88):3517-3526   [Details]
(2006)'Characterization of nonbiological antimicrobial polymers in aqueous solution and at water-lipid interfaces from all-atom molecular dynamics'
Ivanov, I.,Vemparala, S.,Pophristic, V.,Kuroda, K.,DeGrado, W. F.,McCammon, J. A.,Klein, M. L. (2006) 'Characterization of nonbiological antimicrobial polymers in aqueous solution and at water-lipid interfaces from all-atom molecular dynamics'. Journal of the American Chemical Society, 128 (66):1778-1779   [Details]
(2006)'The orphan nuclear receptor ROR gamma t directs the differentiation program of proinflammatory IL-17(+) T helper cells'
Ivanov, Ivaylo I.,McKenzie, Brent S.,Zhou, Liang,Tadokoro, Carlos E.,Lepelley, Alice,Lafaille, Juan J.,Cua, Daniel J.,Littman, Dan R. (2006) 'The orphan nuclear receptor ROR gamma t directs the differentiation program of proinflammatory IL-17(+) T helper cells'. Cell, 126 (66):1121-1133   [Details]
(2005)'Screening the SP011 and EIF5A2 genes in a population of infertile men'
Christensen, G. L.,Ivanov, I. P.,Atkins, J. F.,Mielnik, A.,Schlegel, P. N.,Carrell, D. T. (2005) 'Screening the SP011 and EIF5A2 genes in a population of infertile men'. Fertility and Sterility, 84 (33):758-760   [Details]
(2005)'The design and evaluation of heparin-binding foldamers'
Choi, S.,Clements, D. J.,Pophristic, V.,Ivanov, I.,Vemparala, S.,Bennett, J. S.,Klein, M. L.,Winkler, J. D.,DeGrado, W. E. (2005) 'The design and evaluation of heparin-binding foldamers'. Angewandte Chemie-International Edition, 44 (4141):6685-6689   [Details]
(2005)'Development of the expressed Ig CDR-H3 repertoire is marked by focusing of constraints in length, amino acid use, and charge that are first established in early B cell progenitors'
Ivanov, II,Schelonka, R. L.,Zhuang, Y. X.,Gartland, G. L.,Zemlin, M.,Schroeder, H. W. (2005) 'Development of the expressed Ig CDR-H3 repertoire is marked by focusing of constraints in length, amino acid use, and charge that are first established in early B cell progenitors'. Journal of Immunology, 174 (1212):7773-7780   [Details]
(2005)'Ionic charge transfer effects in water, channels and enzymes'
Dal Peraro, M.,Lamoureux, G.,Ivanov, I.,Raugei, S.,Magistrato, A.,Carloni, P.,Klein, M. L. (2005) 'Ionic charge transfer effects in water, channels and enzymes'. Abstracts of Papers of the American Chemical Society, 230   [Details]
(2005)'A single D-H gene segment creates its own unique CDR-H3 repertoire and is sufficient for B cell development and immune function'
Schelonka, R. L.,Ivanov, II,Jung, D. H.,Ippolito, G. C.,Nitschke, L.,Zhuang, Y. X.,Gartland, G. L.,Pelkonen, J.,Alt, F. W.,Rajewsky, K.,Schroeder, H. W. (2005) 'A single D-H gene segment creates its own unique CDR-H3 repertoire and is sufficient for B cell development and immune function'. Journal of Immunology, 175 (1010):6624-6632   [Details]
(2005)'Immunoglobulin CDR-H3 repertoire development in mouse bone marrow is marked by an increase in length and loss of excessively charged or hydrophobic sequence'
Schroeder, H. W.,Ivanov, I.,Schelonka, R.,Zemlin, M. (2005) 'Immunoglobulin CDR-H3 repertoire development in mouse bone marrow is marked by an increase in length and loss of excessively charged or hydrophobic sequence'. FASEB Journal, 19 (44)   [Details]
(2005)'Forcefield parameterization of inhalational anesthetics, halothane and isoflurane: An ab initio study'
Vemparala, S.,Ivanov, I.,Klein, M. L. (2005) 'Forcefield parameterization of inhalational anesthetics, halothane and isoflurane: An ab initio study'. Abstracts of Papers of the American Chemical Society, 229   [Details]
(2005)'Characterization of non-biological antimicrobial polymers in aqueous solution and at water-lipid interfaces from all atom and coarse grained molecular dynamics'
Ivanov, I.,Vemparala, S.,Pophristic, V.,Kuroda, K.,DeGrado, W. F.,Klein, M. L. (2005) 'Characterization of non-biological antimicrobial polymers in aqueous solution and at water-lipid interfaces from all atom and coarse grained molecular dynamics'. Abstracts of Papers of the American Chemical Society, 229   [Details]
(2005)'Forced expression of charged or hydrophobic amino acids in immunoglobulin CDR-H3 inhibits production of mature IgM plus IgD plus B cells'
Schelonka, R. L.,Ippolito, G. C.,Ivanov, II,Zemlin, M.,Jung, D. H.,Nitschke, L.,Pelkonnen, J.,Alt, F.,Rajewsky, K.,Schroeder, H. W. (2005) 'Forced expression of charged or hydrophobic amino acids in immunoglobulin CDR-H3 inhibits production of mature IgM plus IgD plus B cells'. FASEB Journal, 19 (44)   [Details]
(2005)'Development and applications of an arylamide force field for molecular simulations'
Pophristic, V.,Vemparala, S.,Ivanov, I.,Klein, M. L.,Degrado, W. F. (2005) 'Development and applications of an arylamide force field for molecular simulations'. Abstracts of Papers of the American Chemical Society, 229   [Details]
(2005)'Dynamical flexibility and proton transfer in the arginase active site probed by ab initio molecular dynamics'
Ivanov, I.,Klein, M. L. (2005) 'Dynamical flexibility and proton transfer in the arginase active site probed by ab initio molecular dynamics'. Journal of the American Chemical Society, 127 (1111):4010-4020   [Details]
(2004)'First principles computational study of the active site of arginase'
Ivanov, I.,Klein, M. L. (2004) 'First principles computational study of the active site of arginase'. Proteins-Structure Function and Genetics, 54 (11):1-7   [Details]
(2004)'Transmembrane peptide-induced lipid sorting and mechanism of L-alpha-to-inverted phase transition using coarse-grain molecular dynamics'
Nielsen, S. O.,Lopez, C. F.,Ivanov, I.,Moore, P. B.,Shelley, J. C.,Klein, M. L. (2004) 'Transmembrane peptide-induced lipid sorting and mechanism of L-alpha-to-inverted phase transition using coarse-grain molecular dynamics'. Biophysical Journal, 87 (44):2107-2115   [Details]
(2004)'Escherichia coli mRNAs with strong Shine/Dalgarno sequences also contain 5 ' end sequences complementary to domain # 17 on the 16S ribosomal RNA'
Golshani, A.,Krogan, N. J.,Xu, J.,Pacal, M.,Yang, X. C.,Ivanov, I.,Providenti, M. A.,Ganoza, M. C.,Ivanova, I. G.,AbouHaidar, M. G. (2004) 'Escherichia coli mRNAs with strong Shine/Dalgarno sequences also contain 5 ' end sequences complementary to domain # 17 on the 16S ribosomal RNA'. Biochemical and Biophysical Research Communications, 316 (44):978-983   [Details]
(2004)'Kinetic studies and molecular modelling attribute a crucial role in the specificity and stereoselectivity of penicillin acylase to the pair ArgA145-ArgB263'
Guncheva, M.,Ivanov, I.,Galunsky, B.,Stambolieva, N.,Kaneti, J. (2004) 'Kinetic studies and molecular modelling attribute a crucial role in the specificity and stereoselectivity of penicillin acylase to the pair ArgA145-ArgB263'. European Journal of Biochemistry, 271 (1111):2272-2279   [Details]
(2004)'Identification of a new antizyme mRNA+1 frameshifting stimulatory pseuduoknot in a subset of diverse invertebrates and its apparent absence in intermediate species'
Ivanov, I. P.,Anderson, C. B.,Gesteland, R. F.,Atkins, J. F. (2004) 'Identification of a new antizyme mRNA+1 frameshifting stimulatory pseuduoknot in a subset of diverse invertebrates and its apparent absence in intermediate species'. Journal of Molecular Biology, 339 (33):495-504   [Details]
(2003)'Non-Shine-Dalgarno initiators of translation selected from combinatorial DNA libraries'
Kolev, V.,Ivanova, I.,Berzal-Herranz, A.,Ivanova, I. G. (2003) 'Non-Shine-Dalgarno initiators of translation selected from combinatorial DNA libraries'. Journal of Molecular Microbiology and Biotechnology, 5 (33):154-160   [Details]
(2003)'A simplified equation allowing the determination of kinetic constants of invisible substrates'
Ivanov, I. P.,Miteva, H. J.,Yomtova, V. M. (2003) 'A simplified equation allowing the determination of kinetic constants of invisible substrates'. Analytical Biochemistry, 323 (22):247-248   [Details]
(2003)'Absence of N addition facilitates bone marrow B cell development, but B cells bearing this fetal-like repertoire are less competitive in the periphery'
Ivanov, I.,Schelonka, R.,Schroeder, H. W. (2003) 'Absence of N addition facilitates bone marrow B cell development, but B cells bearing this fetal-like repertoire are less competitive in the periphery'. FASEB Journal, 17 (77)   [Details]
(2003)'Structural determinants of the catalytic activity of arginase: Insights from terascale quantum simulations of the arginase active site'
Ivanov, Ivaylo,Klein, Michael L. (2003) 'Structural determinants of the catalytic activity of arginase: Insights from terascale quantum simulations of the arginase active site'. Abstracts of Papers American Chemical Society, 226 (1-21-2)   [Details]
(2003)'Dynamical flexibility and proton transfer in the arginase active site probed by Ab initio molecular dynamics methods'
Ivanov, Ivaylo,Klein, Michael L. (2003) 'Dynamical flexibility and proton transfer in the arginase active site probed by Ab initio molecular dynamics methods'. Abstracts of Papers American Chemical Society, 226 (1-21-2)   [Details]
(2003)'Maintenance of the correct open reading frame by the ribosome'
Hansen, T. M.,Baranov, P. V.,Ivanov, I. P.,Gesteland, R. F.,Atkins, J. F. (2003) 'Maintenance of the correct open reading frame by the ribosome'. Embo Reports, 4 (55):499-504   [Details]
(2003)'Screening of the SPO11 and EIF5A2 genes in a population of azoospermic and severely oligozoospermic men'
Christensen, G. L.,Ivanov, I. P.,Atkins, J. F.,Schlegel, P.,Mielnik, A.,Carrell, D. T. (2003) 'Screening of the SPO11 and EIF5A2 genes in a population of azoospermic and severely oligozoospermic men'. Fertility and Sterility, 80   [Details]
(2003)'Development of a new transgenic seizure model in mice'
Christensen, Greg L.,Carrell, Douglas T.,Ivanov, Ivaylo P.,Atkins, John F.,Woodhead, Jose H.,White, Steve (2003) 'Development of a new transgenic seizure model in mice'. Epilepsia, 44 (Supplement 9Suppleme):63-63   [Details]
(2003)'Hydrogen bonding in water'
Chen, B.,Ivanov, I.,Klein, M. L.,Parrinello, M. (2003) 'Hydrogen bonding in water'. Physical Review Letters, 91 (2121)   [Details]
(2002)'HCDR3 repertoire and B cell development in the presence and absence of TDT in BALB/cj mice with a single charged D segment'
Ivanov, II,Ippolito, G. C.,Schroeder, H. W. (2002) 'HCDR3 repertoire and B cell development in the presence and absence of TDT in BALB/cj mice with a single charged D segment'. FASEB Journal, 16 (55)   [Details]
(2002)'Ab initio study of aqueous NaOH solution'
Chen, Bin,Ivanov, Ivaylo,Klein, Michael L. (2002) 'Ab initio study of aqueous NaOH solution'. Abstracts of Papers American Chemical Society, 223 (1-21-2)   [Details]
(2002)'Are B cells with highly charged heavy chain complementarity determining region 3 (HCDR3) eliminated?'
Zemlin, M.,Ivanov, I.,Zemlin, C.,Ippolito, G. C.,Schroeder, H. W. (2002) 'Are B cells with highly charged heavy chain complementarity determining region 3 (HCDR3) eliminated?'. FASEB Journal, 16 (55)   [Details]
(2002)'First-principles study of aqueous hydroxide solutions'
Chen, B.,Park, J. M.,Ivanov, I.,Tabacchi, G.,Klein, M. L.,Parrinello, M. (2002) 'First-principles study of aqueous hydroxide solutions'. Journal of the American Chemical Society, 124 (2929):8534-8535   [Details]
(2002)'Computational identification of putative programmed translational frameshift sites'
Shah, A. A.,Giddings, M. C.,Gesteland, R. F.,Atkins, J. F.,Ivanov, I. P. (2002) 'Computational identification of putative programmed translational frameshift sites'. Bioinformatics, 18 (88):1046-1053   [Details]
(2002)'Deprotonation of a histidine residue in aqueous solution using constrained ab initio molecular dynamics'
Ivanov, I.,Klein, M. L. (2002) 'Deprotonation of a histidine residue in aqueous solution using constrained ab initio molecular dynamics'. Journal of the American Chemical Society, 124 (4545):13380-13381   [Details]
(2001)'Absence of TdT normalizes the hydropathicity, but restricts diversity of HCDR3 in mice with a single charged D segment'
Ivanov, II,Ippolito, G. C.,Schroeder, H. W. (2001) 'Absence of TdT normalizes the hydropathicity, but restricts diversity of HCDR3 in mice with a single charged D segment'. FASEB Journal, 15 (55)   [Details]
(2001)'Absence of TDT normalizes the hydropathicity, but restricts diversity of HCDR3 in mice with a single charged D segment'
Ivanov, Ivaylo Ivanov,Ippolito, Gregory C.,Schroeder, Harry W., Jr. (2001) 'Absence of TDT normalizes the hydropathicity, but restricts diversity of HCDR3 in mice with a single charged D segment'. FASEB Journal, 15 (55)   [Details]
(2000)'Discovery of a spermatogenesis stage-specific ornithine decarboxylase antizyme: Antizyme 3'
Ivanov, I. P.,Rohrwasser, A.,Terreros, D. A.,Gesteland, R. F.,Atkins, J. F. (2000) 'Discovery of a spermatogenesis stage-specific ornithine decarboxylase antizyme: Antizyme 3'. Proceedings of the National Academy of Sciences of the United States of America, 97 (99):4808-4813   [Details]
(2000)'Antizyme expression: a subversion of triplet decoding, which is remarkably conserved by evolution, is a sensor for an autoregulatory circuit'
Ivanov, I. P.,Gesteland, R. F.,Atkins, J. F. (2000) 'Antizyme expression: a subversion of triplet decoding, which is remarkably conserved by evolution, is a sensor for an autoregulatory circuit'. Nucleic Acids Research, 28 (1717):3185-3196   [Details]
(2000)'Conservation of polyamine regulation by translational frameshifting from yeast to mammals'
Ivanov, I. P.,Matsufuji, S.,Murakami, Y.,Gesteland, R. F.,Atkins, J. F. (2000) 'Conservation of polyamine regulation by translational frameshifting from yeast to mammals'. Embo Journal, 19 (88):1907-1917   [Details]
(1998)'A second mammalian antizyme: Conservation of programmed ribosomal frameshifting'
Ivanov, I. P.,Gesteland, R. F.,Atkins, J. F. (1998) 'A second mammalian antizyme: Conservation of programmed ribosomal frameshifting'. Genomics, 52 (22):119-129   [Details]
(1998)'The Drosophila gene for antizyme requires ribosomal frameshifting for expression and contains an intronic gene for snRNP Sm D3 on the opposite strand'
Ivanov, I. P.,Simin, K.,Letsou, A.,Atkins, J. F.,Gesteland, R. F. (1998) 'The Drosophila gene for antizyme requires ribosomal frameshifting for expression and contains an intronic gene for snRNP Sm D3 on the opposite strand'. Molecular and Cellular Biology, 18 (33):1553-1561   [Details]
(1998)'Programmed frameshifting in the synthesis of mammalian antizyme is +1 in mammals, predominantly +1 in fission yeast, but -2 in budding yeast'
Ivanov, I. P.,Gesteland, R. F.,Matsufuji, S.,Atkins, J. F. (1998) 'Programmed frameshifting in the synthesis of mammalian antizyme is +1 in mammals, predominantly +1 in fission yeast, but -2 in budding yeast'. Rna-a Publication of the Rna Society, 4 (1010):1230-1238   [Details]
(1998)'Does antizyme exist in Escherichia coli?'
Ivanov, I. P.,Gesteland, R. F.,Atkins, J. F. (1998) 'Does antizyme exist in Escherichia coli?'. Molecular Microbiology, 29 (66):1521-1522   [Details]

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