Research Profile

James Coughlan

Biography

I have vast experience in Molecular Ecology and a prolific and varied research background with strong emphasis on the practical applications of Molecular Ecology in real life situations, particularly fisheries management. I have strong ties with other researchers in this field and with management policy makers. I have successfully accrued a significant amount of research funding over the years and have excellent communication skills.

Publications

Peer Reviewed Journals

 YearPublication
(2015)'Increased understanding of the marine life of a migratory fish gained by combining data on an individual’s ecology and genetic assignment'
Jensen, A.J., Gilbey, J., Friedland, K.D., McGinnity, P., Mork, K.A., Coughlan, J., Cross, T.F., Einarsson, S., Ensing, D., Erkinaro, J., Fiske, P., Garcia de Leaniz, C., Hansen, L. P., Haugland, M., Holm, M., Holst, J.C., Jacobsen, J.A., Karlsson, S., O Maoleidigh, N., Nielsen, E.E., Primmer, C.R., Prodöhl, P. A., Stevens, J.R.., Thomas, K., Vaha, J-P, Verspoor, E., Wennevik, V., Whelan, K. and Hindar, K. (in review) (2015) 'Increased understanding of the marine life of a migratory fish gained by combining data on an individual’s ecology and genetic assignment'. Proceedings of The Royal Society B, [Details]
(2014)'Circadian clock gene (OtsClock1b) variation and time of ocean return in Atlantic salmon Salmo salar'
O’Malley, K.G., Cross, T. F., Carlsson, J., Coughlan, J. P., Dillane, E. and McGinnity, P. (2014) 'Circadian clock gene (OtsClock1b) variation and time of ocean return in Atlantic salmon Salmo salar'. Fisheries Management & Ecology, 21 :82-87 [Details]
(2013)'Rapid, economical SNP and microsatellite discovery based on de novo assembly of a reduced representation genome in a non-model organism: a case study of Atlantic cod'
Carlsson J, Gauthier D, Carlsson JEL, Coughlan JP, Dillane E, FitzGerald RD, Keating FU, McGinnity P, Mirimin L & Cross TF. (2013) (2013) 'Rapid, economical SNP and microsatellite discovery based on de novo assembly of a reduced representation genome in a non-model organism: a case study of Atlantic cod'. Journal of Fish Biology, 82 :944-958 [Details]
(2013)'Selection and phylogenetics of Salmonid MHC Class I: Wild Brown Trout (Salmo trutta) differ from a Non-Native Introduced Strain'
O'Farrell, B, Benzie, JAH, McGinnity, P, de Eyto, E, Dillane, E, Coughlan, J, Cross, TF (2013) 'Selection and phylogenetics of Salmonid MHC Class I: Wild Brown Trout (Salmo trutta) differ from a Non-Native Introduced Strain'. Plos One, 8 [Details]
(2013)'Selection and Phylogenetics of Salmonid MHC Class I: Wild Brown Trout (Salmo trutta) Differ from a Non-Native Introduced Strain'
O'Farrell, B,Benzie, JAH,McGinnity, P,de Eyto, E,Dillane, E,Coughlan, J,Cross, TF (2013) 'Selection and Phylogenetics of Salmonid MHC Class I: Wild Brown Trout (Salmo trutta) Differ from a Non-Native Introduced Strain'. Plos One, 8 [DOI] [Details]
(2012)'MHC-mediated spatial distribution in brown trout (Salmo trutta) fry'
O'Farrell, B,Benzie, JAH,McGinnity, P,Carlsson, J,de Eyto, E,Dillane, E,Graham, C,Coughlan, J,Cross, T (2012) 'MHC-mediated spatial distribution in brown trout (Salmo trutta) fry'. Heredity, 108 :403-409 [DOI] [Details]
(2012)'Balancing selection on MHC class I in wild brown trout (Salmo trutta)'
• O’Farrell B, Dennis C, Benzie J, McGinnity P, Carlsson J, de Eyto E, Coughlan J, Igoe F, Meehan R & Cross T. (2012) 'Balancing selection on MHC class I in wild brown trout (Salmo trutta)'. Journal of Fish Biology, 81 :1357-1374 [Details]
(2012)'Morphological variability of Atlantic salmon Salmo salar and brown trout Salmo trutta in different river environments'
• Drinan, T.J., McGinnity, P., Coughlan, J.P., Cross, T.F. & Harrison, S.S.C. (2012) 'Morphological variability of Atlantic salmon Salmo salar and brown trout Salmo trutta in different river environments'. Ecology of Freshwater Fish, 21 :420-432 [Details]
(2012)'Genetic relationships between Eurasian badgers Meles meles (Carnivora: Mustelidae) in Europe and implications for the colonisation history of Ireland'
• O’Meara, DB, Edwards, CJ, Sleeman DP, Cross, TF, Statham, MJ, McDowell, JR, Dillane, E, Coughlan, JP, O’Leary, D, O’Reilly, C, Bradley, DG & Carlsson, J. (2012) 'Genetic relationships between Eurasian badgers Meles meles (Carnivora: Mustelidae) in Europe and implications for the colonisation history of Ireland'. Biological Journal of The Linnean Society, 106 :893-909 [Details]
(2011)'Fine-scale population structure in a deep-sea teleost (orange roughy, Hoplostethus atlanticus)'
Carlsson, J. , Shephard, S., Coughlan, J., N. Trueman, C., Rogan, E., Cross, T.F.; (2011) 'Fine-scale population structure in a deep-sea teleost (orange roughy, Hoplostethus atlanticus)'. Deep Sea Research Part I, 58 (6):627-636 [Details]
(2011)'Fine-scale population structure in a deep-sea teleost (orange roughy, Hoplostethus atlanticus)'
Carlsson, J,Shephard, S,Coughlan, J,Trueman, CN,Rogan, E,Cross, TF; (2011) 'Fine-scale population structure in a deep-sea teleost (orange roughy, Hoplostethus atlanticus)'. Deep-Sea Research Part I-Oceanographic Research Papers, 58 :627-636 [DOI] [Details]
(2011)'Microsatellite standardization and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon (Salmo salar L.)'
Ellis, JS,Gilbey, J,Armstrong, A,Balstad, T,Cauwelier, E,Cherbonnel, C,Consuegra, S,Coughlan, J,Cross, TF,Crozier, W,Dillane, E,Ensing, D,de Leaniz, CG,Garcia-Vazquez, E,Griffiths, AM,Hindar, K,Hjorleifsdottir, S,Knox, D,Machado-Schiaffino, G,McGinnity, P,Meldrup, D,Nielsen, EE,Olafsson, K,Primmer, CR,Prodohl, P,Stradmeyer, L,Vaha, JP,Verspoor, E,Wennevik, V,Stevens, JR (2011) 'Microsatellite standardization and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon (Salmo salar L.)'. Genetica, 139 :353-367 [DOI] [Details]
(2011)'Varying disease-mediated selection at different life-history stages of Atlantic salmon in fresh water'
de Eyto, E,McGinnity, P,Huisman, J,Coughlan, J,Consuegra, S,Farrell, K,O'Toole, C,Tufto, J,Megens, HJ,Jordan, W,Cross, T,Stet, RJM (2011) 'Varying disease-mediated selection at different life-history stages of Atlantic salmon in fresh water'. Evolutionary Applications, 4 :749-762 [DOI] [Details]
(2011)'Microsatellite standardisation and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon (Salmo salar L.)'
Ellis, J., Gilbey, J. Armstrong, A., Balstad, T., Cauweiler, E., Cherbonnel, C., Consuegra, S., Coughlan, J., Cross, T., Crozier, W., Dillane, E., Ensing, D., Garcia de Leaniz, C., Garcia-Vasquez, E., Griffiths, A., Hindar, K., Hjorleifsdottir, S., Knox, D., Machado-Schiaffino, G., McGinnity, P., Meldrop, D., Neilsen, E., Olafsson, K., Primmer, C., Prodöhl, P., Stradmeyer, L., Vaha, J-P., Verspoor, E., Wennevik, V. and Stevens, J. (2011) 'Microsatellite standardisation and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon (Salmo salar L.)'. Genetica, 139 :353-367 [Details]
(2011)'Microsatellite standardisation and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon (Salmo salar)'
Ellis, J.; Gilbey, J.; Armstrong, A.; Balstad, T.; Cauweiler, E.; Cherbonnel, C.; Consuegra, S.; Coughlan, J.; Cross, T.; (2011) 'Microsatellite standardisation and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon (Salmo salar)'. Genetica, 139 :353-367 [Details]
(2010)'Genetic stock identification of Atlantic salmon (Salmo salar) populations in the southern part of the European range'
Griffiths, AM; Machado-Schiaffino, G; Dillane, E; Coughlan, J; Horreo, JL; Bowkett, AE; Minting, P; Toms, S; Roche, W; Gargan, P; McGinnity, P; Cross, T; Bright, D; Garcia-Vazquez, E; Stevens, JR; (2010) 'Genetic stock identification of Atlantic salmon (Salmo salar) populations in the southern part of the European range'. BMC Genetics, 11 (31):1-27 [DOI] [Details]
(2009)'Population structure of short-beaked common dolphins (Delphinus delphis) in the North Atlantic Ocean as revealed by mitochondrial and nuclear genetic markers (vol 156, pg 821, 2009)'
Mirimin, L,Westgate, A,Rogan, E,Rosel, P,Read, A,Coughlan, J,Cross, T (2009) 'Population structure of short-beaked common dolphins (Delphinus delphis) in the North Atlantic Ocean as revealed by mitochondrial and nuclear genetic markers (vol 156, pg 821, 2009)'. Marine Biology, 156 :1087-1087 [DOI] [Details]
(2009)'Pleistocene Genetic Legacy Suggests Incipient Species of Sebastes Mentella In The Irminger Sea'
Stefansson, MO, Sigurdsson, T, Pampoulie, C, Danielsdottir, AK, Thorgilsson, B, Ragnarsdottir, A, Gislason, D, Coughlan, J, Cross, TF, Bernatchez, L; (2009) 'Pleistocene Genetic Legacy Suggests Incipient Species of Sebastes Mentella In The Irminger Sea'. Heredity, 102 (5):514-524 [DOI] [Details]
(2009)'Population Structure of Short-Beaked Common Dolphins (Delphinus Delphis) In The North Atlantic Ocean As Revealed By Mitochondrial and Nuclear Genetic Markers (Vol 156, Pg 821, 2009)'
Mirimin, L, Westgate, A, Rogan, E, Rosel, P, Read, A, Coughlan, J, Cross, T; (2009) 'Population Structure of Short-Beaked Common Dolphins (Delphinus Delphis) In The North Atlantic Ocean As Revealed By Mitochondrial and Nuclear Genetic Markers (Vol 156, Pg 821, 2009)'. Marine Biology, 156 (5):1087-1087 [DOI] [Details]
(2009)'Pleistocene genetic legacy suggests incipient species of Sebastes mentella in the Irminger Sea'
Stefansson, MO,Sigurdsson, T,Pampoulie, C,Danielsdottir, AK,Thorgilsson, B,Ragnarsdottir, A,Gislason, D,Coughlan, J,Cross, TF,Bernatchez, L; (2009) 'Pleistocene genetic legacy suggests incipient species of Sebastes mentella in the Irminger Sea'. Heredity, 102 :514-524 [DOI] [Details]
(2009)'Population structure of short-beaked common dolphins (Delphinus delphis) in the North Atlantic Ocean as revealed by mitochondrial and nuclear genetic markers'
Mirimin, L,Westgate, A,Rogan, E,Rosel, P,Read, A,Coughlan, J,Cross, T (2009) 'Population structure of short-beaked common dolphins (Delphinus delphis) in the North Atlantic Ocean as revealed by mitochondrial and nuclear genetic markers'. Marine Biology, 156 :821-834 [DOI] [Details]
(2008)'Contrasting levels of genetic differentiation among putative neutral microsatellite loci in Atlantic herring Clupea harengus populations and the implications for assessing stock structure'
Watts, P. C.Watts, P. C.,O'Leary, D.O'Leary, D.,Cross, M. C.Cross, M. C.,Coughlan, J.Coughlan, J.,Dillane, E.Dillane, E.,Kay, S. M.Kay, S. M.,Wylde, S.Wylde, S.,Stet, R.Stet, R.,Nash, R. D. M.Nash, R. D. M.,Hatfield, E. M. C.Hatfield, E. M. C.,Cross, T. F.Cross, T. F.; (2008) 'Contrasting levels of genetic differentiation among putative neutral microsatellite loci in Atlantic herring Clupea harengus populations and the implications for assessing stock structure'. Archives of Hydrobiologia, 606 :27-3327   [Details]
(2008)'Demographics and landscape features determine intra-river population genetic structure in Atlantic salmon (Salmo salar L.): the case of the River Moy in Ireland'
• Dillane E, McGinnity P, Coughlan J, Cross M, Cross T. (2008) 'Demographics and landscape features determine intra-river population genetic structure in Atlantic salmon (Salmo salar L.): the case of the River Moy in Ireland'. Molecular Ecology, 17 :4786-4800 [Details]
(2007)'Spatial and temporal patterns in microsatellite DNA variation of wild Atlantic salmon (Salmo salar) in Irish Rivers'
Dillane, E. Cross, M., McGinnity, P., Coughlan, J.P., Galvin, P., Wilkins, N.P. and T.F. Cross. (2007) 'Spatial and temporal patterns in microsatellite DNA variation of wild Atlantic salmon (Salmo salar) in Irish Rivers'. Fisheries Management & Ecology, 14 :209-220 [Details]
(2007)'Investigating The Possible Role of Benthic Macroinvertebrates and Zooplankton In The Life Cycle of The Haplosporidian Bonamia Ostreae'
Lynch, SA, Armitage, DV, Coughlan, J, Mulcahy, MF, Culloty, SC; (2007) 'Investigating The Possible Role of Benthic Macroinvertebrates and Zooplankton In The Life Cycle of The Haplosporidian Bonamia Ostreae'. Experimental Parasitology, 115 (4):359-368 [DOI] [Details]
(2007)'Natural selection acts on Atlantic salmon major histocompatibility (MH) variability in the wild'
de Eyto, E,McGinnity, P,Consuegra, S,Coughlan, J,Tufto, J,Farrell, K,Megens, HJ,Jordan, W,Cross, T,Stet, RJM; (2007) 'Natural selection acts on Atlantic salmon major histocompatibility (MH) variability in the wild'. Proceedings of The Royal Society B-Biological Sciences, 274 :861-869 [DOI] [Details]
(2007)'Investigating the possible role of benthic macroinvertebrates and zooplankton in the life cycle of the haplosporidina Bonamia ostreae'
Lynch, S.A., Armitage, D.V., Coughlan, J., Mulcahy, M.F. and Culloty, S.C.; (2007) 'Investigating the possible role of benthic macroinvertebrates and zooplankton in the life cycle of the haplosporidina Bonamia ostreae'. Experimental Parasitology, 115 :359-368 [Details]
(2007)'Natural selection acts on Atlantic salmon major histocompatibility (MH) variability in the wild'
de Eyto, E;McGinnity, P;Consuegra, S;Coughlan, J;Tufto, J;Farrell, K;Megens, HJ;Jordan, W;Cross, T;Stet, RJM (2007) 'Natural selection acts on Atlantic salmon major histocompatibility (MH) variability in the wild'. Proceedings of The Royal Society B-Biological Sciences, 274 :861-869 [DOI] [Details]
(2007)'Microsatellite Variation In Cod Gadus Morhua Throughout Its Geographic Range'
O'Leary, DB, Coughlan, J, Dillane, E, McCarthy, TV, Cross, TF; (2007) 'Microsatellite Variation In Cod Gadus Morhua Throughout Its Geographic Range'. Journal of Fish Biology, 70 (NA):310-335 [DOI] [Details]
(2007)'Natural selection acts on Atlantic salmon MHC variability in the wild'
deEyto, E., McGinnity, P., Consuegra, S., Coughlan, J., Tufto, J., Farrell, K., Megens, H.-J., Jordan, W., Cross T. and Stet, R.J.M. ; (2007) 'Natural selection acts on Atlantic salmon MHC variability in the wild'. Proceedings of the Royal Society B, 274 :861-869 [Details]
(2007)'Investigating the possible role of benthic macroinvertebrates and zooplankton in the life cycle of the haplosporidian Bonamia ostreae'
Lynch, SA;Armitage, DV;Coughlan, J;Mulcahy, MF;Culloty, SC (2007) 'Investigating the possible role of benthic macroinvertebrates and zooplankton in the life cycle of the haplosporidian Bonamia ostreae'. Experimental Parasitology, 115 :359-368 [DOI] [Details]
(2007)'Population specific smolt development, migration and maturity schedules in Atlantic salmon in a natural river environment'
McGinnity, P.McGinnity, P.,de Eyto, E.de Eyto, E.,Cross, T. F.Cross, T. F.,Coughlan, J.Coughlan, J.,Whelan, K.Whelan, K.,Ferguson, A.Ferguson, A.; (2007) 'Population specific smolt development, migration and maturity schedules in Atlantic salmon in a natural river environment'. Aquaculture, 273 (2-32-3):257-268257   [DOI] [Details]
(2006)'Temporal variation in an immune response gene (MHC I) in anadromous Salmo trutta in an Irish river before and during aquaculture activities'
Coughlan, J.,McGinnity, P., O'Farrell, B.,Dillane, E., Diserud, O., de Eyto, E.,Farrell, K., Whelan, Stet, R. J. M.Stet,mCross, T. F. (2006) 'Temporal variation in an immune response gene (MHC I) in anadromous Salmo trutta in an Irish river before and during aquaculture activities'. Ices Journal of Marine Science, 63 (77):1248-12551248   [Details]
(2006)'Tetranucleotide microsatellite loci from the striped dolphin (Stenella coeruleoalba Meyen, 1833)'
Mirimin L., Coughlan J., Rogan E. and Cross T.; (2006) 'Tetranucleotide microsatellite loci from the striped dolphin (Stenella coeruleoalba Meyen, 1833)'. Molecular Ecology Notes, 6 (2):493-495 [Details]
(2006)'Isolation and characterization of novel microsatellite loci for the short-beaked common dolphin (Delphinus delphis) and cross-amplification in other cetacean species'
Coughlan, J;Mirimin, L;Dillane, E;Rogan, E;Cross, TF (2006) 'Isolation and characterization of novel microsatellite loci for the short-beaked common dolphin (Delphinus delphis) and cross-amplification in other cetacean species'. Molecular Ecology Notes, 6 :490-492 [DOI] [Details]
(2006)'Application of a rapid method of SNP analysis (glycosylase mediated polymorphism detection) to mtDNA and nuclear DNA of cod Gadus morhua'
O'Leary, DB;Coughlan, J;McCarthy, TV;Cross, TF (2006) 'Application of a rapid method of SNP analysis (glycosylase mediated polymorphism detection) to mtDNA and nuclear DNA of cod Gadus morhua'. Journal of Fish Biology, 69 :145-153 [DOI] [Details]
(2006)'Tetranucleotide microsatellite loci from the striped dolphin (Stenella coeruleoalba Meyen, 1833)'
Mirimin, L;Coughlan, J;Rogan, E;Cross, TF (2006) 'Tetranucleotide microsatellite loci from the striped dolphin (Stenella coeruleoalba Meyen, 1833)'. Molecular Ecology Notes, 6 :493-495 [DOI] [Details]
(2006)'Isolation and characterization of seven polymorphic microsatellite loci in the box jellyfish (Chironex fleckeri, Cubozoa, Cnidaria)'
Coughlan, J. P.Coughlan, J. P.,Seymour, J.Seymour, J.,Cross, T. F.Cross, T. F.; (2006) 'Isolation and characterization of seven polymorphic microsatellite loci in the box jellyfish (Chironex fleckeri, Cubozoa, Cnidaria)'. Molecular Ecology Notes, 6 (11):41-4341   [Details]
(2006)'Application of a rapid method of SNP analysis (glycosylase mediated polymorphism detection) to mtDNA and nuclear DNA of cod Gadus morhua'
O'Leary, DB,Coughlan, J,McCarthy, TV,Cross, TF; (2006) 'Application of a rapid method of SNP analysis (glycosylase mediated polymorphism detection) to mtDNA and nuclear DNA of cod Gadus morhua'. Journal of Fish Biology, 69 :145-153 [DOI] [Details]
(2006)'Isolation and characterization of novel microsatellite loci for the short-beaked common dolphin (Delphinus delphis) and cross-amplification in other cetacean species'
Coughlan, J,Mirimin, L,Dillane, E,Rogan, E,Cross, TF; (2006) 'Isolation and characterization of novel microsatellite loci for the short-beaked common dolphin (Delphinus delphis) and cross-amplification in other cetacean species'. Molecular Ecology, 6 :490-492 [DOI] [Details]
(2005)'Genetic variation in the lesser flying squid Todaropsis eblanae (Cephalopoda, Ommastrephidae) in east Atlantic and Mediterranean waters'
Dillane, E,Galvin, P,Coughlan, J,Lipinski, M,Cross, TF; (2005) 'Genetic variation in the lesser flying squid Todaropsis eblanae (Cephalopoda, Ommastrephidae) in east Atlantic and Mediterranean waters'. Marine Ecology Progress Series, 292 :225-232 [Details]
(2005)'Genetic variation in the lesser flying squid Todaropsis eblanae (Cephalopoda, Ommastrephidae) in east Atlantic and Mediterranean waters'
Dillane, E;Galvin, P;Coughlan, J;Lipinski, M;Cross, TF (2005) 'Genetic variation in the lesser flying squid Todaropsis eblanae (Cephalopoda, Ommastrephidae) in east Atlantic and Mediterranean waters'. Marine Ecology Progress Series, 292 :225-232 [Details]
(2005)'Isolation and characterisation of microsatellite loci in the box jellyfish (Chironex fleckeri)'
Coughlan, J., Seymour, J. and Cross, T. F. (2005) 'Isolation and characterisation of microsatellite loci in the box jellyfish (Chironex fleckeri)'. Molecular Ecology Notes, (6):41-43 [Details]
(2004)'Characterisation of six polymorphic microsatellite loci in the Bermuda skink, Eumeces longirostris'
COUGHLAN, J. KITSON, L., DILLANE, E., CROSS, T.F. & DAVENPORT, J. 678-679; (2004) 'Characterisation of six polymorphic microsatellite loci in the Bermuda skink, Eumeces longirostris'. Molecular Ecology Notes, 4 (*):678-679 [Details]
(2000)'Isolation and characterization of 11 microsatellite loci in Atlantic halibut (Hippoglossus hippoglossus L.)'
Coughlan, J,Stefansson, M,Galvin, P,Dillane, E,Fitzgerald, R,Cross, TF; (2000) 'Isolation and characterization of 11 microsatellite loci in Atlantic halibut (Hippoglossus hippoglossus L.)'. Molecular Ecology, 9 :822-824 [Details]
(2000)'Polymorphic variable number of tandem repeat (VNTR) loci in the ommastrephid squid, Illex coindetii and Todaropsis eblanae'
Dillane, E,Galvin, P,Coughlan, J,Rodhouse, PGK,Cross, TF; (2000) 'Polymorphic variable number of tandem repeat (VNTR) loci in the ommastrephid squid, Illex coindetii and Todaropsis eblanae'. Molecular Ecology, 9 :1002-1004 [Details]
(1998)'Microsatellite DNA variation in wild populations and farmed strains of turbot from Ireland and Norway: a preliminary study'
Coughlan, J. P.Coughlan, J. P.,Imsland, A. K.Imsland, A. K.,Galvin, P. T.Galvin, P. T.,Fitzgerald, R. D.Fitzgerald, R. D.,Naevdal, G.Naevdal, G.,Cross, T. F.Cross, T. F.; (1998) 'Microsatellite DNA variation in wild populations and farmed strains of turbot from Ireland and Norway: a preliminary study'. Journal of Fish Biology, 52 (55):916-922916   [Details]
(1997)'Allozyme variation in populations of Atlantic salmon located throughout Europe: diversity that could be compromised by introductions of reared fish'
Bourke, EA and Coughlan, J and Jansson, H and Galvin, P and Cross, TF (1997) 'Allozyme variation in populations of Atlantic salmon located throughout Europe: diversity that could be compromised by introductions of reared fish'. ICES Journal of Marine Science: Journal du Conseil, 54 (6):974-985 [Details]
(1997)'The extent of allozyme variation in populations of Atlantic salmon located throughout Europe: diversity that could be compromised by introductions of reared fish'
Bourke, E.A., Coughlan, J., Jansson, H., Galvin, P. and Cross, T.F. ; (1997) 'The extent of allozyme variation in populations of Atlantic salmon located throughout Europe: diversity that could be compromised by introductions of reared fish'. ICES Journal of Marine Sciences, 54 :974-985 [Details]
(1996)'Four polymorphic microsatellites in turbot Scophthalmus maximus'
Coughlan, J,McCarthy, E,McGregor, D,ODonoghue, P,Galvin, P,Fitzgerald, R,Daemen, E,Imsland, A,Stefansson, S,Cross, T; (1996) 'Four polymorphic microsatellites in turbot Scophthalmus maximus'. Animal Genetics, 27 :441-441 [Details]

Book Chapters

 YearPublication
(2008)'Detrimental genetic impacts of interactions between reared strains adn wild populations of marien anadromous fish and invertebrate species'
Cross, T., Burnell, G., Coughlan, J., Culloty, S., Dillane , E., McGinnity, P., and Rogan E. (2008) 'Detrimental genetic impacts of interactions between reared strains adn wild populations of marien anadromous fish and invertebrate species' In: Aquaculture in the Ecosystem. Dordrecht, Netherlands: Springer. [Details]
(2008)'Detrimental genetic effects of interactions between reared strains and wild populations of marine and anadromous fish and invertebrate species: are all species at risk?'
Cross T.F., Burnell, G., Coughlan, J., Culloty, S., Dillane, E., McGinnity, P. and Rogan, E. ; (2008) 'Detrimental genetic effects of interactions between reared strains and wild populations of marine and anadromous fish and invertebrate species: are all species at risk?' In: M.Holmer, K. Black, C.Duarte, N. Marba, and T. Karakassis (eds). Aquaculture in the ecosystem. Dordrecht, Netherlands: Springer. [Details]
(2007)'Genetic considerations for Stocking and Ranching of Atlantic salmon'
Cross, T.F., McGinnity, P., Coughlan, J., Dillane, E., Ferguson, A., Koljonen, M-L., Milner, N., O¿Reilly, P. and Vasemagi, A. ; (2007) 'Genetic considerations for Stocking and Ranching of Atlantic salmon' In: The Genetics of Atlantic Salmon: Implications for Conservation. ': The Atlantic Salmon Trust. [Details]
(1998)'Rivers Blackwater and Lee in Munster'
O'Halloran, J., Morgan, G., O'Sullivan, W., Giller, P. S., Smith, C., Cassidy, A. and Coughlan, J.; (1998) 'Rivers Blackwater and Lee in Munster' In: Studies in Irish rivers and lakes. [Details]
(1995)'Research on farmed turbot (Scophthalmus maximus) in Ireland'
FitzGerald, R.D., Flannigan, M., Brennan, C., Haraldsson, H., Clarke, J., Coughlan, J., Irwin, S., Roby, F., Ní Chara, U. & Cross, T.F.; (1995) 'Research on farmed turbot (Scophthalmus maximus) in Ireland' In: Irish Marine Science. Ireland: Galway University Press. [Details]

Other Journals

 YearPublication
(2005)'Genetic variation in the lesser flying squid Todaropsis eblanae (Cephalopoda, Ommastrephidae) in east Atlantic and Mediterranean waters'
Dillane, E and Galvin, P and Coughlan, J and Lipinski, M and Cross, TF (2005) 'Genetic variation in the lesser flying squid Todaropsis eblanae (Cephalopoda, Ommastrephidae) in east Atlantic and Mediterranean waters' Marine ecology. Progress series, 292 :225-232. [Details]
(2001)'Microsatellite DNA variation in reared strains of turbot (Scophthalmus maximus) and Atlantic halibut (Hippoglossus hippoglossus) compared with wild samples'
Stefansson, M. O., Coughlan, J. and Cross, T.F. ; (2001) 'Microsatellite DNA variation in reared strains of turbot (Scophthalmus maximus) and Atlantic halibut (Hippoglossus hippoglossus) compared with wild samples' Conseils Internationale pour l'Exploration de la Mer C.M. Doc, . [Details]
(2000)'Isolation and characterization of 11 microsatellite loci in Atlantic halibut (Hippoglossus hippoglossus L.)'
Coughlan, J and Stefansson, M and Galvin, P and Dillane, E and Fitzgerald, R and Cross, TF (2000) 'Isolation and characterization of 11 microsatellite loci in Atlantic halibut (Hippoglossus hippoglossus L.)' Molecular ecology, 9 (6) :822-824. [Details]
(2000)'Polymorphic variable number of tandem repeat (VNTR) loci in the ommastrephid squid, Illex coindetii and Todaropsis eblanae'
Dillane, E and Galvin, P and Coughlan, J and Rodhouse, PGK and Cross, TF (2000) 'Polymorphic variable number of tandem repeat (VNTR) loci in the ommastrephid squid, Illex coindetii and Todaropsis eblanae' Molecular ecology, 9 (7) :1002-1004. [Details]
(1997)'Investigations of stress distributions in tungsten-filled via structures using finite element analysis'
Coughlan, J and Foley, S and Mathewson, A (1997) 'Investigations of stress distributions in tungsten-filled via structures using finite element analysis' Microelectronics Reliability, 37 (10) :1549-1552. [Details]
(1997)'Finite Element Analysis of Stress Distributions in Interconnect Structures'
Coughlan, J and Foley, S and Mathewson, A (1997) 'Finite Element Analysis of Stress Distributions in Interconnect Structures' Proc ESSDERC Conf, . [Details]
(1996)'Four polymorphic microsatellites in turbot Scophthalmus maximus'
Coughlan, J and McCarthy, E and McGregor, D and O'Donoghue, P and Galvin, P and Fitzgerald, R and Daemen, E and Imsland, A and Stefansson, S and Cross, T (1996) 'Four polymorphic microsatellites in turbot Scophthalmus maximus' Animal Genetics, 27 (6) :441-441. [Details]

Abstract

 YearPublication
(2005)Utility of microsatellite loci for detecting reduction of variation in reared aquaculture strains compared with wild progenitors and also as genetic tags in breeding programmes: evidence from abalone, halibut and salmon.
Cross, TF,Coughlan, J,Burnell, G,Cross, MC,Dillane, E,Stefansson, MO,Wilkins, NP (2005) Utility of microsatellite loci for detecting reduction of variation in reared aquaculture strains compared with wild progenitors and also as genetic tags in breeding programmes: evidence from abalone, halibut and salmon. Abstract [DOI] [Details]

Other

 YearPublication
(2008)Contrasting Levels of Genetic Differentiation Among Putative Neutral Microsatellite Loci In Atlantic Herring Clupea Harengus Populations and The Implications For Assessing Stock Structure.
Watts, PC, O'Leary, D, Cross, MC, Coughlan, J, Dillane, E, Kay, SM, Wylde, S, Stet, R, Nash, RDM, Hatfield, EMC, Cross, TF; (2008) Contrasting Levels of Genetic Differentiation Among Putative Neutral Microsatellite Loci In Atlantic Herring Clupea Harengus Populations and The Implications For Assessing Stock Structure. Other [DOI] [Details]
(2008)Contrasting levels of genetic differentiation among putative neutral microsatellite loci in Atlantic herring Clupea harengus populations and the implications for assessing stock structure.
Watts, PC,O'Leary, D,Cross, MC,Coughlan, J,Dillane, E,Kay, SM,Wylde, S,Stet, R,Nash, RDM,Hatfield, EMC,Cross, TF (2008) Contrasting levels of genetic differentiation among putative neutral microsatellite loci in Atlantic herring Clupea harengus populations and the implications for assessing stock structure. Other [DOI] [Details]
(2007)Population Specific Smolt Development, Migration and Maturity Schedules In Atlantic Salmon In A Natural River Environment.
McGinnity, P, de Eyto, E, Cross, TF, Coughlan, J, Whelan, K, Ferguson, A; (2007) Population Specific Smolt Development, Migration and Maturity Schedules In Atlantic Salmon In A Natural River Environment. Other [DOI] [Details]
(2007)Population specific smolt development, migration and maturity schedules in Atlantic salmon in a natural river environment.
McGinnity, P,de Eyto, E,Cross, TF,Coughlan, J,Whelan, K,Ferguson, A (2007) Population specific smolt development, migration and maturity schedules in Atlantic salmon in a natural river environment. Other [DOI] [Details]
(2006)Temporal variation in an immune response gene (MHC I) in anadromous Salmo trutta in an Irish river before and during aquaculture activities.
Coughlan, J,McGinnity, P,O'Farrell, B,Dillane, E,Diserud, O,de Eyto, E,Farrell, K,Whelan, K,Stet, RJM,Cross, TF (2006) Temporal variation in an immune response gene (MHC I) in anadromous Salmo trutta in an Irish river before and during aquaculture activities. Other [DOI] [Details]
(1997)Allozyme variation in populations of Atlantic salmon located throughout Europe: diversity that could be compromised by introductions of reared fish.
Bourke, EA,Coughlan, J,Jansson, H,Galvin, P,Cross, TF (1997) Allozyme variation in populations of Atlantic salmon located throughout Europe: diversity that could be compromised by introductions of reared fish. Other [Details]

Contact details

  • James Coughlan
    Senior Postdoctoral Researcher
  • j.coughlan@ucc.ie
  • School Biological, Earth & Environmental Sciences
    University College Cork
    Cork
    Ireland
  • +353-21-490-3000

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School of Biological, Earth and Environmental Sciences

An Scoil Eolaíochtaí Bitheolaíocha, Domhaneolaíocha agus Comhshaoil

University College Cork, Distillery Fields, North Mall, Cork, Ireland T23 N73K

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