Personal profile
Biography
Biography
Dr. Ken Nally is a senior lecturer in The School of Biochemistry and Cell Biology and is a Principal Investigator and Group Leader at APC Microbiome Ireland, University College Cork (UCC). He has spent the last 20 years working in the area of Gut Inflammation discovery research primarily in the context of collaborations with multinational biotechnology and pharmaceutical companies such as GlaxoSmithKline Inc. (GSK), Regulus Therapeutics (USA), Smart Cells (USA) and Hoffmann-La Roche Inc. (USA). He is currently collaborating with AbbVie Inc. (USA) in the area of Inflammatory Bowel Diseases (IBD). During the period (2006-2012), Dr. Nally directed and managed part of a successful 5 year research collaboration (approx. value €10 million) between APC Microbiome Ireland and GSK in area of IBD with a focus on early drug discovery research, inflammation, leukocyte trafficking, miRNA and epigenetic regulation of inflammatory gene expression. Dr. Nally was awarded an independent SFI Career Development Award grant (2014) to expand his research activities in these areas. His research group takes a functional genomics approach to discover the fundamental mechanisms underpinning cross-talk between inflammatory cytokine networks and their downstream effects on the transcriptional and epigenetic regulation of inflammatory, anti-microbial and cell death gene expression. In 2015 Dr. Nally was awarded an SFI Spoke grant award (€7.5 million) to fund a five-year collaboration between the APC Microbiome Institute and AbbVie Inc. to discover new therapeutic targets for the next generation of biologics that could be used to treat patients with Crohn’s Disease (CD). Dr. Nally established the first Flow Cytometry Platform at APC/UCC and he is currently Group Leader of the Gut Inflammation and Host Microbe Dialogue Research Groups and Director of the Flow Cytometry Platform at APC/UCC.
Research Interests
Research theme: Inflammation, Cytokine Biology, Cell Death, Host-Microbe Dialogue
SDGs: SDG 3 - Good Health and Well-Being, SDG 4 Quality Education, SDG 9 Industry, Innovation and Infrastructure
Research key words: Host-Microbe interactions; Macrophages, Dendritic Cells, Homeostatic and Protective Immunity, Inflammation, Host tolerance to disease.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 9 Industry, Innovation, and Infrastructure
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SDG 17 Partnerships for the Goals
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Collaborations and top research areas from the last five years
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IL-32 drives inflammatory responses in IFN-γ primed human macrophages via a Myddosome-dependent pathway and is elevated in COVID-19
Ramón-Vázquez, A., Skowyra, A., Crowley, T., Velmurugan, J., Lee, C., Lindsay, A. J., Woznicki, J. A., Stamou, P., Nelson, O., Jeffery, I. B., Lohan, A. J., Albrich, W. C., O’Mahony, L., Melgar, S., Shanahan, F., Cao, X., Macoritto, M., Sadhukhan, R., Levesque, M. C. & McRae, B. L. & 2 others, , 2025, In: bioRxiv. p. 2025.05.29.656795Research output: Contribution to journal › Article › peer-review
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Human intestinal organoids: Modeling gastrointestinal physiology and immunopathology — current applications and limitations
Flood, P., Hanrahan, N., Nally, K. & Melgar, S., Feb 2024, In: European Journal of Immunology. 54, 2, 2250248.Research output: Contribution to journal › Review article › peer-review
Open Access -
Quantification of Cytokine-Induced Cell Death in Human Colonic Organoids Using Live Fluorescence Microscopy
Flood, P. & Nally, K., Aug 2024, In: Journal of Visualized Experiments. 2024-August, 210, e66759.Research output: Contribution to journal › Article › peer-review
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An IBD-associated pathobiont synergises with NSAID to promote colitis which is blocked by NLRP3 inflammasome and Caspase-8 inhibitors
Singh, R., Rossini, V., Stockdale, S. R., Saiz-Gonzalo, G., Hanrahan, N., D’ Souza, T., Clooney, A., Draper, L. A., Hill, C., Nally, K., Shanahan, F., Andersson-Engels, S. & Melgar, S., 2023, In: Gut Microbes. 15, 1, 2163838.Research output: Contribution to journal › Article › peer-review
Open Access -
Intracellular glycogen accumulation by human gut commensals as a niche adaptation trait
Esteban-Torres, M., Ruiz, L., Rossini, V., Nally, K. & van Sinderen, D., 2023, In: Gut Microbes. 15, 1, 2235067.Research output: Contribution to journal › Review article › peer-review
Open Access
Press/Media
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Reports on Cytokines Findings from University College Cork Provide New Insights (Quantification of Cytokine-induced Cell Death In Human Colonic Live Fluorescence)
25/09/24
1 item of Media coverage
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New Inflammatory Bowel Disease Research from University College Cork Discussed (An IBD-associated pathobiont synergises with NSAID to promote colitis which is blocked by NLRP3 inflammasome and Caspase-8 inhibitors)
Draper, L., Melgar, S., Andersson-Engels, S., Nally, K. & Shanahan, F.
11/12/23
1 item of Media coverage
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University College Cork Researchers Illuminate Research in Gastroenterology (Microbial bile salt hydrolase activity influences gene expression profiles and gastrointestinal maturation in infant mice)
Melgar, S., Caplice, N., Hueston, C., Gahan, C., Claesson, M. & Nally, K.
13/12/22
1 item of Media coverage
Press/Media