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Pasha Baranov

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Pasha Baranov

Professor

1995 …2026

Research activity per year

Personal profile

Biography

Pavel Baranov (Gaelic: Pól O'Reithe; Russian: Павел Баранов) aka Pasha (Russian: Паша) is a professor of Biomolecular Informatics. Pasha specialises in mRNA decoding and protein synthesis. His lab develops and maintains RiboSeq.Org resources. Pasha received his Ph.D. in the School of Chemistry at the Moscow State University in 1998. Before coming to Ireland in 2007, he worked at Max-Planck Institute for Molecular Genetics in Berlin and in the Human Genetics Department at the University of Utah in Salt Lake City. For accurate and up-to-date information use Pasha's lab page. 

Research Interests

Gene expression and beyond, see Lab Page.

Teaching Activities

PVB teaches BC3010, BC3011, BC4002, BC4012, GN3002 and MB6303 modules. 

UCC Futures (primary)

  • Future Pharmaceuticals

Other research affiliations

  • UCC Futures - Artificial Intelligence and Data Analytics
  • UCC Futures - Future Medicines

PhD Supervision

  • Available for PhD supervision

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Collaborations and top research areas from the last five years

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  • Community benchmarking and evaluation of human unannotated microprotein detection by mass spectrometry based proteomics

    Wacholder, A., Deutsch, E. W., Kok, L. W., van Dinter, J. T., Lee, J., Wright, J. C., Leblanc, S., Jayatissa, A. H., Jiang, K., Arefiev, I., Cao, K., Bourassa, F., Trifiro, F.-A., Bassani-Sternberg, M., Baranov, P. V., Bogaert, A., Chothani, S., Fierro-Monti, I., Fijalkowska, D. & Gevaert, K. & 14 others, Hubner, N., Mudge, J. M., Ruiz-Orera, J., Schulz, J., Vizcaíno, J. A., Prensner, J. R., Brunet, M. A., Martinez, T. F., Slavoff, S. A., Roucou, X., Choudhary, J. S., van Heesch, S., Moritz, R. L. & Carvunis, A.-R., 21 Jan 2026, In: Nature Communications. 17, 1, p. 1241 1241.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Expanding the human proteome with microproteins and peptideins

    Deutsch, E. W., Kok, L. W., Mudge, J. M., Valls, C. F., Jungreis, I., Ruiz-Orera, J., Sun, Z., Kusebauch, U., Fierro-Monti, I., Abelin, J. G., Alba, M. M., Aspden, J. L., Bandyopadhyay, S., Banerjee, K., Baranov, P. V., Bazzini, A. A., Bourassa, F., Bruford, E. A., Calviello, L. & Carr, S. A. & 44 others, Carvunis, A. R., Chothani, S., Clauwaert, J., Dean, K., Faridi, P., Frankish, A., Goodale, A., Green, T., Hubner, N., Ingolia, N. T., Kellis, M., Magrane, M., Martin, M. J., Martinez, T. F., Menschaert, G., Ohler, U., Orchard, S., Potter, A., Rackham, O. J. L., Rees, M. G., Root, D. E., Roth, J. A., Roucou, X., Sialana, F. J., Slavoff, S. A., Świrski, M. I., Tierney, J. A. S., Trifiro, F. A., Valen, E., Vasylieva, V., Wacholder, A., Wang, S., Wang, L., Weissman, J. S., Wu, W., Xie, Z., Choudhary, J. S., Bassani-Sternberg, M., Vizcaíno, J. A., Ternette, N., Brunet, M. A., Moritz, R. L., Prensner, J. R. & van Heesch, S., 2026, (Accepted/In press) In: Nature. 654, 8119, p. 813-825 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File

  • Common cell lysis procedures distort ribosome profiling analyses of gene expression

    O’Connell, A., Fedorova, A. D., O’Connor, P. B. F., Zhdanov, A. V., Baranov, P. V., Loughran, G. & Andreev, D. E., Dec 2025, In: Genome Biology. 26, 1, 241.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Comprehensive analysis of yeast +1 ribosomal frameshifting unveils a novel stimulator supporting two distinct frameshifting mechanisms

    Fenton, D. A., Bożko, M., Świrski, M. I., Loughran, G., Yordanova, M. M., Kufel, J., Atkins, J. F. & Baranov, P. V., 26 Nov 2025, In: Nucleic Acids Research. 53, 22, gkaf1301.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR)

    Loughran, G., Andreev, D. E., Terenin, I. M., Namy, O., Mikl, M., Yordanova, M. M., McManus, C. J., Firth, A. E., Atkins, J. F., Fraser, C. S., Ignatova, Z., Iwasaki, S., Kufel, J., Larsson, O., Leidel, S. A., Mankin, A. S., Mariotti, M., Tanenbaum, M. E., Topisirovic, I. & Vázquez-Laslop, N. & 19 others, Viero, G., Caliskan, N., Chen, Y., Clark, P. L., Dinman, J. D., Farabaugh, P. J., Gilbert, W. V., Ivanov, P., Kieft, J. S., Mühlemann, O., Sachs, M. S., Shatsky, I. N., Sonenberg, N., Steckelberg, A. L., Willis, A. E., Woodside, M. T., Valasek, L. S., Dmitriev, S. E. & Baranov, P. V., Mar 2025, In: Nature Structural and Molecular Biology. 32, 3, p. 418-430 13 p., 2613.

    Research output: Contribution to journal › Article › peer-review

    Open Access
View all 131 research outputs