Personal profile
Biography
B.Sc. in Plant and Microbiology Biotechnology (1H), University College Cork (UCC).
Ph.D. in Medicine (UCC), including a one-year Marie Curie studentship at Wageningen University, The Netherlands. Title "Gut microbiota in Human Health and Disease".
Postdoctoral training in Experimental Evolution: Angus Buckling Research Group, Department of Zoology, University of Oxford, U.K.
Marie Curie Intra-European Research Fellowship on Blastocystis, Teagasc, Moorepark.
In 2015, I was awarded a prestigious Royal Society-Research Ireland University Research Fellowship and moved to APC Microbiome Ireland, UCC. In 2017 I was appointed as a lecturer at the School of Microbiology, UCC.
Research Interests
I am broadly interested in the ecology and evolution of the gut microbiota and current research projects focus on the prevalence, diversity and function of gut microbial eukarya (Fungi and Protists e.g. Candida, Blastocystis), bacteriophage-bacteria interactions and co-evolution, evolution of virulence in the context of the gut microbiota (focus on Enterobacterales) and disease, antibiotics and the microbiome including AMR evolution.
To address these research questions we use the selective isolation and strain-typing of focal microbial groups of interest, in vitro and ex vivo modelling and genomic analysis. We complement these approaches by tracking and studying the eco-evolutionary dynamics of gut microbes in vivo.
For up to date publications and preprints please see google scholar link - https://scholar.google.com/citations?user=iOCYO2sAAAAJ&hl=en
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Collaborations and top research areas from the last five years
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Correction to: Examining the healthy human microbiome concept (Nature Reviews Microbiology, (2025), 23, 3, (192-205), 10.1038/s41579-024-01107-0)
Human Microbiome Action Consortium, Mar 2025, In: Nature Reviews Microbiology. 23, 3, p. 206 1 p.Research output: Contribution to journal › Comment/Debate
Open Access -
Examining the healthy human microbiome concept
Human Microbiome Action Consortium, Mar 2025, In: Nature Reviews Microbiology. 23, 3, p. 192-205 14 p., 103.Research output: Contribution to journal › Article › peer-review
Open Access -
Short-sighted evolution of virulence for invasive gut microbes: From hypothesis to tests
Scanlan, P. D., Baquero, F. & Levin, B. R., 3 Dec 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 49, e2409905121.Research output: Contribution to journal › Article › peer-review
Open Access -
Collateral Damage in the Human Gut Microbiome - Blastocystis Is Significantly Less Prevalent in an Antibiotic-Treated Adult Population Compared to Non-Antibiotic Treated Controls
Jeffery, I. B., Cotter, P. D. & Scanlan, P. D., 25 Feb 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 822475.Research output: Contribution to journal › Article › peer-review
Open Access -
Ecological and Evolutionary responses to Antibiotic Treatment in the Human Gut Microbiota
Pennycook, J. H. & Scanlan, P. D., 1 Sep 2021, In: FEMS Microbiology Reviews. 45, 5, fuab018.Research output: Contribution to journal › Review article › peer-review
Open Access
Press/Media
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-University College Cork : UCC physicist awarded Fellowship for semiconductor research
Broderick, C., Cryan, J. F., Keeney, L., Scanlan, P. & Callanan, P.
8/12/23
2 items of Media coverage
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UCC physicist awarded Fellowship for semiconductor research
Broderick, C., Cryan, J. F., Keeney, L., Scanlan, P. & Callanan, P.
7/12/23
1 item of Media coverage
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2022/04/07 - Overview of Microbial Eukarya Conference Session Set by Microbiology Society
12/01/22
1 item of Media coverage
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