A proposal for a standardised protocol to barcode all land plants

Mark W. Chase; Robyn S. Cowan; Peter M. Hollingsworth; Cassio Van Den Berg; Santiago Madriñán; Gitte Petersen; Ole Seberg; Tina Jørgsensen; Kenneth M. Cameron; Mark Carine; Niklas Pedersen; Terry A.J. Hedderson; Ferozah Conrad; Gerardo A. Salazar; James E. Richardson; Michelle L. Hollingsworth; Timothy G. Barraclough; Laura Kelly; Mike Wilkinson

doi:10.1002/tax.562004

A proposal for a standardised protocol to barcode all land plants

Mark W. Chase
, Robyn S. Cowan
, Peter M. Hollingsworth
, Cassio Van Den Berg
, Santiago Madriñán
, Gitte Petersen
, Ole Seberg
, Tina Jørgsensen
, Kenneth M. Cameron
, Mark Carine
, Niklas Pedersen
, Terry A.J. Hedderson
, Ferozah Conrad
, Gerardo A. Salazar
, James E. Richardson
, Michelle L. Hollingsworth
, Timothy G. Barraclough
, Laura Kelly
, Mike Wilkinson

Royal Botanic Gardens, Kew
Royal Botanic Garden Edinburgh
Universidade Estadual de Feira de Santana
Universidad de los Andes Colombia
University of Copenhagen
New York Botanical Garden
The Natural History Museum, London
University of Cape Town
Kirstenbosch Research Centre
Universidad Nacional Autónoma de México
Aberystwyth University

Research output: Contribution to journal › Review article › peer-review

Abstract

We propose in this paper to use three regions of plastid DNA as a standard protocol for barcoding all land plants. We review the other markers that have been proposed and discuss their advantages and disadvantages. The low levels of variation in plastid DNA make three regions necessary; there are no plastid regions, coding or non-coding, that evolve as rapidly as mitochondrial DNA generally does in animals. We outline two, three-region options, (1) rpoC1, rpoB and matK or (2) rpoC1, matK andpsbA-trnH as viable markers for land plant barcoding.

Original language	English
Pages (from-to)	295-299
Number of pages	5
Journal	Taxon
Volume	56
Issue number	2
DOIs	https://doi.org/10.1002/tax.562004
Publication status	Published - May 2007
Externally published	Yes

Keywords

ITS nrDNA
Land plant barcoding
matK
Mitochondrial DNA
Plastid DNA
psbA-trnH
rbcL
rpoB
rpoCl
trnL

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10.1002/tax.562004

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Chase, M. W., Cowan, R. S., Hollingsworth, P. M., Van Den Berg, C., Madriñán, S., Petersen, G., Seberg, O., Jørgsensen, T., Cameron, K. M., Carine, M., Pedersen, N., Hedderson, T. A. J., Conrad, F., Salazar, G. A., Richardson, J. E., Hollingsworth, M. L., Barraclough, T. G., Kelly, L., & Wilkinson, M. (2007). A proposal for a standardised protocol to barcode all land plants. Taxon, 56(2), 295-299. https://doi.org/10.1002/tax.562004

@article{2dc9afddd850411ebefdeaa33e2275e5,

title = "A proposal for a standardised protocol to barcode all land plants",

abstract = "We propose in this paper to use three regions of plastid DNA as a standard protocol for barcoding all land plants. We review the other markers that have been proposed and discuss their advantages and disadvantages. The low levels of variation in plastid DNA make three regions necessary; there are no plastid regions, coding or non-coding, that evolve as rapidly as mitochondrial DNA generally does in animals. We outline two, three-region options, (1) rpoC1, rpoB and matK or (2) rpoC1, matK andpsbA-trnH as viable markers for land plant barcoding.",

keywords = "ITS nrDNA, Land plant barcoding, matK, Mitochondrial DNA, Plastid DNA, psbA-trnH, rbcL, rpoB, rpoCl, trnL",

author = "Chase, \{Mark W.\} and Cowan, \{Robyn S.\} and Hollingsworth, \{Peter M.\} and \{Van Den Berg\}, Cassio and Santiago Madri{\~n}{\'a}n and Gitte Petersen and Ole Seberg and Tina J{\o}rgsensen and Cameron, \{Kenneth M.\} and Mark Carine and Niklas Pedersen and Hedderson, \{Terry A.J.\} and Ferozah Conrad and Salazar, \{Gerardo A.\} and Richardson, \{James E.\} and Hollingsworth, \{Michelle L.\} and Barraclough, \{Timothy G.\} and Laura Kelly and Mike Wilkinson",

year = "2007",

month = may,

doi = "10.1002/tax.562004",

language = "English",

volume = "56",

pages = "295--299",

journal = "Taxon",

issn = "0040-0262",

publisher = "International Association for Plant Taxonomy",

number = "2",

}

Chase, MW, Cowan, RS, Hollingsworth, PM, Van Den Berg, C, Madriñán, S, Petersen, G, Seberg, O, Jørgsensen, T, Cameron, KM, Carine, M, Pedersen, N, Hedderson, TAJ, Conrad, F, Salazar, GA, Richardson, JE, Hollingsworth, ML, Barraclough, TG, Kelly, L & Wilkinson, M 2007, 'A proposal for a standardised protocol to barcode all land plants', Taxon, vol. 56, no. 2, pp. 295-299. https://doi.org/10.1002/tax.562004

TY - JOUR

T1 - A proposal for a standardised protocol to barcode all land plants

AU - Chase, Mark W.

AU - Cowan, Robyn S.

AU - Hollingsworth, Peter M.

AU - Van Den Berg, Cassio

AU - Madriñán, Santiago

AU - Petersen, Gitte

AU - Seberg, Ole

AU - Jørgsensen, Tina

AU - Cameron, Kenneth M.

AU - Carine, Mark

AU - Pedersen, Niklas

AU - Hedderson, Terry A.J.

AU - Conrad, Ferozah

AU - Salazar, Gerardo A.

AU - Richardson, James E.

AU - Hollingsworth, Michelle L.

AU - Barraclough, Timothy G.

AU - Kelly, Laura

AU - Wilkinson, Mike

PY - 2007/5

Y1 - 2007/5

N2 - We propose in this paper to use three regions of plastid DNA as a standard protocol for barcoding all land plants. We review the other markers that have been proposed and discuss their advantages and disadvantages. The low levels of variation in plastid DNA make three regions necessary; there are no plastid regions, coding or non-coding, that evolve as rapidly as mitochondrial DNA generally does in animals. We outline two, three-region options, (1) rpoC1, rpoB and matK or (2) rpoC1, matK andpsbA-trnH as viable markers for land plant barcoding.

AB - We propose in this paper to use three regions of plastid DNA as a standard protocol for barcoding all land plants. We review the other markers that have been proposed and discuss their advantages and disadvantages. The low levels of variation in plastid DNA make three regions necessary; there are no plastid regions, coding or non-coding, that evolve as rapidly as mitochondrial DNA generally does in animals. We outline two, three-region options, (1) rpoC1, rpoB and matK or (2) rpoC1, matK andpsbA-trnH as viable markers for land plant barcoding.

KW - ITS nrDNA

KW - Land plant barcoding

KW - matK

KW - Mitochondrial DNA

KW - Plastid DNA

KW - psbA-trnH

KW - rbcL

KW - rpoB

KW - rpoCl

KW - trnL

UR - https://www.scopus.com/pages/publications/34347387600

U2 - 10.1002/tax.562004

DO - 10.1002/tax.562004

M3 - Review article

AN - SCOPUS:34347387600

SN - 0040-0262

VL - 56

SP - 295

EP - 299

JO - Taxon

JF - Taxon

IS - 2

ER -

A proposal for a standardised protocol to barcode all land plants

Abstract

Keywords

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