TY - JOUR
T1 - Graph metrics as summary statistics for Approximate Bayesian computation with application to network model parameter estimation
AU - Fay, Damien
AU - Moore, Andrew W.
AU - Brown, Ken
AU - Filosi, Michele
AU - Jurman, Giuseppe
PY - 2015/3/1
Y1 - 2015/3/1
N2 - In this paper, we investigate Approximate Bayes Computation as a technique for estimating the parameters of graph generators relative to an observed graph. Specifically, we investigate six spectral graph metrics with a view to evaluating their suitability as summary statistics. The overall findings are that Approximate Bayesian Computation can result in reasonable estimates of the parameter posteriors, if the rank of the metrics is sufficiently high. For some graph metrics, biases can exist in the estimated parameters though these appear, empirically, to be small. We demonstrate that combining metrics to form a new summary statistic provides more robust estimates. Given these results, the authors then create two, somewhat arbitrary, graph generators and show how the parameters for these may be estimated with ease. In addition, we show how to apply model selection to determine which generator best explains the observed graph.
AB - In this paper, we investigate Approximate Bayes Computation as a technique for estimating the parameters of graph generators relative to an observed graph. Specifically, we investigate six spectral graph metrics with a view to evaluating their suitability as summary statistics. The overall findings are that Approximate Bayesian Computation can result in reasonable estimates of the parameter posteriors, if the rank of the metrics is sufficiently high. For some graph metrics, biases can exist in the estimated parameters though these appear, empirically, to be small. We demonstrate that combining metrics to form a new summary statistic provides more robust estimates. Given these results, the authors then create two, somewhat arbitrary, graph generators and show how the parameters for these may be estimated with ease. In addition, we show how to apply model selection to determine which generator best explains the observed graph.
KW - ABC
KW - Graph metric
KW - Network tuning
KW - Parameter estimation
UR - https://www.scopus.com/pages/publications/84942279757
U2 - 10.1093/comnet/cnu009
DO - 10.1093/comnet/cnu009
M3 - Article
AN - SCOPUS:84942279757
SN - 2051-1310
VL - 3
SP - 52
EP - 83
JO - Journal of Complex Networks
JF - Journal of Complex Networks
IS - 1
ER -